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MONBRDRAFT_34162 hypothetical protein [ Monosiga brevicollis MX1 ]

Gene ID: 5894818, updated on 23-Nov-2023

Summary

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Gene symbol
MONBRDRAFT_34162
Gene description
hypothetical protein
Locus tag
MONBRDRAFT_34162
Gene type
protein coding
RNA name
uncharacterized protein
RefSeq status
PROVISIONAL
Organism
Monosiga brevicollis MX1 (strain: MX1)
Lineage
Eukaryota; Choanoflagellida; Craspedida; Salpingoecidae; Monosiga
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Genomic context

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See MONBRDRAFT_34162 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
40

NW_001865068.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_001865068.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans. King N, et al. Nature, 2008 Feb 14. PMID 18273011, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation-coupled chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription elongation factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001865068.1 Reference assembly

    Range
    165794..176385
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001749466.1 → XP_001749518.1  uncharacterized protein MONBRDRAFT_34162 [Monosiga brevicollis MX1]

    See identical proteins and their annotated locations for XP_001749518.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A9V9Y8
    Conserved Domains (8) summary
    cd09918
    Location:1479 → 1570
    SH2_Nterm_SPT6_like; N-terminal Src homology 2 (SH2) domain found in Spt6
    cd09928
    Location:1583 → 1665
    SH2_Cterm_SPT6_like; C-terminal Src homology 2 (SH2) domain found in Spt6
    pfam14633
    Location:1453 → 1664
    SH2_2; SH2 domain
    pfam14641
    Location:416 → 540
    HTH_44; Helix-turn-helix DNA-binding domain of SPT6
    pfam14878
    Location:1148 → 1251
    DLD; Death-like domain of SPT6
    cl21482
    Location:879 → 1026
    RuvC_resolvase; Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes ...
    cl22429
    Location:1031 → 1133
    HHH_5; Helix-hairpin-helix domain
    cl23807
    Location:1704 → 1782
    WWbp; WW-domain ligand protein
Protein Accession Links
GenPept Link UniProtKB Link
EDQ85569.1

Gene LinkOut

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Molecular Biology Databases