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hccs holocytochrome c synthase [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 583826, updated on 14-Dec-2023

Summary

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Symbol
hccs
Full Name
holocytochrome c synthase
Primary source
EchinoBase:ECB-GENE-23136830
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See hccs in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145609.1 (32097044..32102403)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577019.1 (63398..70413, complement)

NW_022145609.1Genomic Context describing neighboring genes Neighboring gene chloride channel CLIC-like protein 1 Neighboring gene echinoidin Neighboring gene tetratricopeptide repeat protein 39B Neighboring gene 5'-AMP-activated protein kinase catalytic subunit alpha-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables holocytochrome-c synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytochrome c-heme linkage IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytochrome c-type heme lyase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145609.1 Reference Spur_5.0 Primary Assembly

    Range
    32097044..32102403
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030996321.1 → XP_030852181.1  cytochrome c-type heme lyase

    UniProtKB/TrEMBL
    A0A7M7PHX4
    Conserved Domains (1) summary
    pfam01265
    Location:43 → 283
    Cyto_heme_lyase; Cytochrome c/c1 heme lyase
Nucleotide Protein
Heading Accession and Version

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