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nudcd2 NudC domain containing 2 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 579639, updated on 14-Dec-2023

Summary

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Symbol
nudcd2
Full Name
NudC domain containing 2
Primary source
EchinoBase:ECB-GENE-23042640
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See nudcd2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145596.1 (724638..730143, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003578946.1 (227182..234881, complement)

NW_022145596.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein C8orf48 homolog Neighboring gene gem nuclear organelle associated protein 5 Neighboring gene F-box and leucine rich repeat protein 3 Neighboring gene MIT domain-containing protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nudC domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145596.1 Reference Spur_5.0 Primary Assembly

    Range
    724638..730143 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030980268.1 → XP_030836128.1  nudC domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A7M7NGJ7

  2. XM_030980267.1 → XP_030836127.1  nudC domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A7M7NGJ7

  3. XM_030980272.1 → XP_030836132.1  nudC domain-containing protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A7M7NKG9
    Conserved Domains (1) summary
    cl00175
    Location:20 → 111
    alpha-crystallin-Hsps_p23-like; alpha-crystallin domain (ACD) found in alpha-crystallin-type small heat shock proteins, and a similar domain found in p23 (a cochaperone for Hsp90) and in other p23-like proteins.

  4. XM_030980271.1 → XP_030836131.1  nudC domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A7M7NGA2
    Conserved Domains (1) summary
    cd06494
    Location:11 → 102
    p23_NUDCD2_like; p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.

  5. XM_030980269.1 → XP_030836129.1  nudC domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A7M7NGA2
    Conserved Domains (1) summary
    cd06494
    Location:11 → 102
    p23_NUDCD2_like; p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Nucleotide Protein
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