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ublcp1 ubiquitin like domain containing CTD phosphatase 1 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 576064, updated on 14-Dec-2023

Summary

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Symbol
ublcp1
Full Name
ubiquitin like domain containing CTD phosphatase 1
Primary source
EchinoBase:ECB-GENE-23078973
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See ublcp1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145600.1 (34422015..34435884)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577040.1 (52465..67035)

NW_022145600.1Genomic Context describing neighboring genes Neighboring gene ribose 5-phosphate isomerase A Neighboring gene protein FAM136A Neighboring gene exocyst complex component 4 Neighboring gene uncharacterized LOC105441837 Neighboring gene eukaryotic translation initiation factor 2 alpha kinase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-like domain-containing CTD phosphatase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145600.1 Reference Spur_5.0 Primary Assembly

    Range
    34422015..34435884
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003724210.3 → XP_003724258.1  ubiquitin-like domain-containing CTD phosphatase 1 isoform X2

    UniProtKB/TrEMBL
    A0A7M7GG80
    Conserved Domains (2) summary
    cl21460
    Location:73 → 266
    HAD_like; Haloacid Dehalogenase-like Hydrolases
    cl28922
    Location:9 → 33
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  2. XM_776410.4 → XP_781503.1  ubiquitin-like domain-containing CTD phosphatase 1 isoform X1

    UniProtKB/TrEMBL
    A0A7M7REX7
    Conserved Domains (2) summary
    cd01813
    Location:5 → 79
    Ubl_UBLCP1; ubiquitin-like (Ubl) domain found in ubiquitin-like domain-containing CTD phosphatase 1 (UBLCP1) and similar proteins
    cl21460
    Location:119 → 312
    HAD_like; Haloacid Dehalogenase-like Hydrolases
Nucleotide Protein
Heading Accession and Version

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