exoc3l1 exocyst complex component 3-like 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: exoc3l1provided by ZNC
Official Full Name: exocyst complex component 3-like 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-061207-36
See related: Ensembl:ENSDARG00000051899 AllianceGenome:ZFIN:ZDB-GENE-061207-36
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: exoc3l; si:ch211-51l3.1
Summary: Predicted to enable SNARE binding activity. Predicted to be involved in exocyst localization and exocytosis. Predicted to be located in transport vesicle. Predicted to be part of exocyst. Orthologous to human EXOC3L1 (exocyst complex component 3 like 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 25

Exon count:: 13

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	25	NC_007136.7 (14425836..14434262, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	25	NC_007136.6 (14329436..14337625, complement)

Chromosome 25 - NC_007136.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables SNARE binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in exocyst localization	IBA Inferred from Biological aspect of Ancestor more info
involved_in exocytosis	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within exocytosis	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasmic vesicle	IEA Inferred from Electronic Annotation more info
part_of exocyst	IBA Inferred from Biological aspect of Ancestor more info
part_of exocyst	IEA Inferred from Electronic Annotation more info
located_in transport vesicle	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: exocyst complex component 3-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001099422.1 → NP_001092892.1 exocyst complex component 3-like protein

See identical proteins and their annotated locations for NP_001092892.1

Status: PROVISIONAL

Source sequence(s)

BC139871

UniProtKB/Swiss-Prot

A2AV37, A5D6T1

Related

ENSDARP00000094733.3, ENSDART00000103957.4

Conserved Domains (1) summary

pfam06046
Location:206 → 763

Sec6; Exocyst complex component Sec6

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007136.7 Reference GRCz11 Primary Assembly

Range

14425836..14434262 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005174338.4 → XP_005174395.1 exocyst complex component 3-like protein isoform X1

UniProtKB/TrEMBL

A0A8M2BLL7

Conserved Domains (1) summary

cl19885
Location:206 → 496

Sec6; Exocyst complex component Sec6