U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

prdm15 PR domain containing 15 [ Danio rerio (zebrafish) ]

Gene ID: 566512, updated on 12-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
prdm15provided by ZNC
Official Full Name
PR domain containing 15provided by ZNC
Primary source
ZFIN:ZDB-GENE-080618-4
See related
Ensembl:ENSDARG00000098867 AllianceGenome:ZFIN:ZDB-GENE-080618-4
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Acts upstream of or within primitive erythrocyte differentiation. Is expressed in cranial ganglion; intermediate cell mass of mesoderm; and muscle pioneer. Orthologous to human PRDM15 (PR/SET domain 15). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See prdm15 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (33268826..33301552, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (33325448..33359727, complement)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene malate dehydrogenase 2, NAD (mitochondrial) Neighboring gene BAF chromatin remodeling complex subunit BCL7B a Neighboring gene transducin beta like 2 Neighboring gene C2 calcium dependent domain containing 2 Neighboring gene testis expressed 14, intercellular bridge forming factor

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Efficient identification of CRISPR/Cas9-induced insertions/deletions by direct germline screening in zebrafish. Brocal I, et al. BMC Genomics, 2016 Mar 24. PMID 27009152, Free PMC Article
  2. Genome-wide survey and developmental expression mapping of zebrafish SET domain-containing genes. Sun XJ, et al. PLoS One, 2008 Jan 30. PMID 18231586, Free PMC Article
  3. The Kdm/Kmt gene families in the self-fertilizing mangrove rivulus fish, Kryptolebias marmoratus, suggest involvement of histone methylation machinery in development and reproduction. Fellous A, et al. Gene, 2019 Mar 1. PMID 30458291
  4. A network of epigenetic regulators guides developmental haematopoiesis in vivo. Huang HT, et al. Nat Cell Biol, 2013 Dec. PMID 24240475, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within methylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within primitive erythrocyte differentiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
PR domain zinc finger protein 15

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    33268826..33301552 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009305497.4 → XP_009303772.1  PR domain zinc finger protein 15

    UniProtKB/TrEMBL
    A0A8M3AX18
    Related
    ENSDARP00000138203.2, ENSDART00000163360.2
    Conserved Domains (5) summary
    COG5048
    Location:312 → 807
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:657 → 677
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:826 → 844
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:334 → 356
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:669 → 694
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials