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ccdc18 coiled-coil domain containing 18 [ Danio rerio (zebrafish) ]

Gene ID: 564276, updated on 27-Mar-2024

Summary

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Official Symbol
ccdc18provided by ZNC
Official Full Name
coiled-coil domain containing 18provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-5414
See related
Ensembl:ENSDARG00000078822 AllianceGenome:ZFIN:ZDB-GENE-030131-5414
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fd16d12; wu:fd16d12; si:dkeyp-1a11.3; si:ch211-132a5.3
Summary
Orthologous to human CCDC18 (coiled-coil domain containing 18). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See ccdc18 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
28
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (10468362..10564297, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (10684763..10780264, complement)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene Wnt ligand secretion mediator Neighboring gene scinderin like b Neighboring gene metal response element binding transcription factor 2 Neighboring gene divergent protein kinase domain 1Aa

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
coiled-coil domain-containing protein 18
Names
natriuretic peptide receptor B
XP_692712.5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001365136.1 → NP_001352065.1  coiled-coil domain-containing protein 18

    Status: VALIDATED

    Source sequence(s)
    BX323564, BX927121, CU638732
    UniProtKB/TrEMBL
    A0A8N7TB84, A8E7I8, F1R277
    Conserved Domains (1) summary
    cl25732
    Location:240 → 1051
    SMC_N; RecF/RecN/SMC N terminal domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    10468362..10564297 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_687620.9 → XP_692712.5  coiled-coil domain-containing protein 18

    UniProtKB/TrEMBL
    A8E7I8
    Related
    ENSDARP00000118802.2, ENSDART00000132167.3
    Conserved Domains (1) summary
    cl25732
    Location:240 → 1051
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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