gbgt1l5 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1, like 5 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: gbgt1l5provided by ZNC
Official Full Name: globoside alpha-1,3-N-acetylgalactosaminyltransferase 1, like 5provided by ZNC
Primary source: ZFIN:ZDB-GENE-080402-11
See related: Ensembl:ENSDARG00000019207 AllianceGenome:ZFIN:ZDB-GENE-080402-11
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: abo; FS-L5; si:dkey-16g11.2
Summary: Predicted to enable hexosyltransferase activity. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 5

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (25025053..25037454, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (24521057..24533654, complement)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables glycosyltransferase activity	IEA Inferred from Electronic Annotation more info
enables hexosyltransferase activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables transferase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within carbohydrate metabolic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: histo-blood group ABO system transferase

Names: ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase)

NP_001116741.1

EC 2.4.1.37

EC 2.4.1.40

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001123269.1 → NP_001116741.1 histo-blood group ABO system transferase

Status: PROVISIONAL

Source sequence(s)

BX842571

UniProtKB/TrEMBL

A0A8M1NGN5, B0S7I1

Related

ENSDARP00000010651.6, ENSDART00000027237.8

Conserved Domains (1) summary

cl11394
Location:37 → 301

Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold