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ube2e1 ubiquitin-conjugating enzyme E2E 1 [ Danio rerio (zebrafish) ]

Gene ID: 563542, updated on 12-Sep-2024

Summary

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Official Symbol
ube2e1provided by ZNC
Official Full Name
ubiquitin-conjugating enzyme E2E 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-071004-16
See related
Ensembl:ENSDARG00000116649 AllianceGenome:ZFIN:ZDB-GENE-071004-16
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:171646
Summary
Orthologous to human UBE2E1 (ubiquitin conjugating enzyme E2 E1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 19
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (17358526..17376046)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (17898630..17917475)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene mannosidase endo-alpha like Neighboring gene splicing factor 3a, subunit 3 Neighboring gene NFKB inhibitor interacting Ras-like 1 Neighboring gene ribosomal protein L15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Transcriptional events co-regulated by hypoxia and cold stresses in Zebrafish larvae. Long Y, et al. BMC Genomics, 2015 May 15. PMID 25975375, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC171646

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin conjugating enzyme activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
ubiquitin-conjugating enzyme E2 E1
NP_001096586.1
XP_005159563.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001103116.1 → NP_001096586.1  ubiquitin-conjugating enzyme E2 E1

    See identical proteins and their annotated locations for NP_001096586.1

    Status: PROVISIONAL

    Source sequence(s)
    BC151907
    UniProtKB/TrEMBL
    A0A8M1NE36, A7MBT5, F6NVS5
    Related
    ENSDARP00000105375.3, ENSDART00000123519.3
    Conserved Domains (2) summary
    COG5078
    Location:48 → 194
    COG5078; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
    pfam00179
    Location:53 → 190
    UQ_con; Ubiquitin-conjugating enzyme

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    17358526..17376046
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005159506.5 → XP_005159563.1  ubiquitin-conjugating enzyme E2 E1 isoform X1

    See identical proteins and their annotated locations for XP_005159563.1

    UniProtKB/TrEMBL
    A0A8M1NE36, A7MBT5, F6NVS5
    Conserved Domains (2) summary
    COG5078
    Location:48 → 194
    COG5078; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
    pfam00179
    Location:53 → 190
    UQ_con; Ubiquitin-conjugating enzyme
Nucleotide Protein
Heading Accession and Version

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