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si:ch211-113a14.22 si:ch211-113a14.22 [ Danio rerio (zebrafish) ]

Gene ID: 560748, updated on 12-Sep-2024

Summary

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Official Symbol
si:ch211-113a14.22provided by ZNC
Official Full Name
si:ch211-113a14.22provided by ZNC
Primary source
ZFIN:ZDB-GENE-121214-203
See related
Ensembl:ENSDARG00000114895 AllianceGenome:ZFIN:ZDB-GENE-121214-203
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable DNA binding activity. Predicted to be involved in nucleosome assembly. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
chromosome: 25
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (36347097..36347740)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (35797350..35798014)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137489387 Neighboring gene si:ch211-113a14.18 Neighboring gene histone H3-like Neighboring gene histone H3-like Neighboring gene histone cluster 1 H2A family member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
histone H2B 1/2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    36347097..36347740
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_684153.9 → XP_689245.2  histone H2B 1/2-like

    See identical proteins and their annotated locations for XP_689245.2

    UniProtKB/TrEMBL
    A0A8N7T7J2, R4GE15
    Related
    ENSDARP00000126726.1, ENSDART00000152449.2
    Conserved Domains (2) summary
    smart00427
    Location:26 → 122
    H2B; Histone H2B
    pfam00125
    Location:26 → 100
    Histone; Core histone H2A/H2B/H3/H4
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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