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si:cabz01071909.2 si:cabz01071909.2 [ Danio rerio (zebrafish) ]

Gene ID: 560148, updated on 25-Apr-2024

Summary

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Official Symbol
si:cabz01071909.2provided by ZNC
Official Full Name
si:cabz01071909.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-161017-114
See related
Ensembl:ENSDARG00000091841 AllianceGenome:ZFIN:ZDB-GENE-161017-114
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable metal ion binding activity. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See si:cabz01071909.2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (72348414..72357958, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (72468423..72478552)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene protein NLRC3-like Neighboring gene stonustoxin subunit alpha-like Neighboring gene si:cabz01071907.1 Neighboring gene gastrula zinc finger protein XlCGF8.2DB-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
gastrula zinc finger protein XlCGF8.2DB-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    72348414..72357958 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_683538.9 → XP_688630.2  gastrula zinc finger protein XlCGF8.2DB-like

    UniProtKB/TrEMBL
    A0A8N7UV54, E7F097
    Related
    ENSDARP00000109193.1, ENSDART00000127023.4
    Conserved Domains (3) summary
    COG5048
    Location:18 → 227
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:71 → 91
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:83 → 108
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases