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cd99 CD99 molecule [ Danio rerio (zebrafish) ]

Gene ID: 559896, updated on 12-Sep-2024

Summary

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Official Symbol
cd99provided by ZNC
Official Full Name
CD99 moleculeprovided by ZNC
Primary source
ZFIN:ZDB-GENE-061103-391
See related
Ensembl:ENSDARG00000051975 AllianceGenome:ZFIN:ZDB-GENE-061103-391
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7159661; zgc:153928
Summary
Predicted to be involved in T cell extravasation; homotypic cell-cell adhesion; and positive regulation of neutrophil extravasation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in posterior lateral line primordium. Orthologous to human CD99 (CD99 molecule (Xg blood group)). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (33355398..33380020, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (32622719..32647484, complement)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene matrix-remodelling associated 5a Neighboring gene glycogenin 2 Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene dehydrogenase/reductase (SDR family) X-linked Neighboring gene cAMP responsive element binding protein 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Molecular dissection of the migrating posterior lateral line primordium during early development in zebrafish. Gallardo VE, et al. BMC Dev Biol, 2010 Dec 13. PMID 21144052, Free PMC Article
  2. Characterization of the neuroligin gene family expression and evolution in zebrafish. Rissone A, et al. Dev Dyn, 2010 Feb. PMID 20034102
  3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in T cell extravasation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in homotypic cell-cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in positive regulation of neutrophil extravasation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
CD99 molecule
Names
DKEYP-86F8.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001079980.2 → NP_001073449.1  CD99 molecule isoform 1 precursor

    See identical proteins and their annotated locations for NP_001073449.1

    Status: VALIDATED

    Source sequence(s)
    BX322647, BX784035
    UniProtKB/TrEMBL
    A0A8M2B740, A0JMK7, B8A4U1
    Related
    ENSDARP00000116659.1, ENSDART00000136383.3
    Conserved Domains (1) summary
    pfam12301
    Location:54 → 207
    CD99L2; CD99 antigen like protein 2

  2. NM_001431084.1 → NP_001418013.1  CD99 molecule isoform 2 precursor

    Status: VALIDATED

    Source sequence(s)
    BX784035
    UniProtKB/TrEMBL
    A0A8M2B6K1

  3. NM_001431085.1 → NP_001418014.1  CD99 molecule isoform 3 precursor

    Status: VALIDATED

    Source sequence(s)
    BX322647, BX784035
    UniProtKB/TrEMBL
    A0A8M2B740, B8A4U1
    Related
    ENSDARP00000122599.1, ENSDART00000141347.2

  4. NM_001431086.1 → NP_001418015.1  CD99 molecule isoform 4 precursor

    Status: VALIDATED

    Source sequence(s)
    BX784035
    UniProtKB/TrEMBL
    A0A8M2B6T4

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    33355398..33380020 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009292151.4 → XP_009290426.1  CD99 molecule isoform X2

    UniProtKB/TrEMBL
    A0A8M2B740, A0A8M3AHX2, B8A4U1
    Conserved Domains (1) summary
    pfam12301
    Location:23 → 184
    CD99L2; CD99 antigen like protein 2

  2. XM_068219728.1 → XP_068075829.1  CD99 molecule isoform X3

  3. XM_068219725.1 → XP_068075826.1  CD99 molecule isoform X1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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