shisa10.1 shisa family member 10, tandem duplicate 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: shisa10.1provided by ZNC
Official Full Name: shisa family member 10, tandem duplicate 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-6596
See related: Ensembl:ENSDARG00000013681 AllianceGenome:ZFIN:ZDB-GENE-030131-6596
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fk47a03; wu:fk47a03; zgc:153224; si:dkey-42i9.6
Summary: Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SHISA5 (shisa family member 5). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 22

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	22	NC_007133.7 (10560734..10570749, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	22	NC_007133.6 (10531052..10541067, complement)

Chromosome 22 - NC_007133.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Component	Evidence Code	Pubs
located_in endoplasmic reticulum	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: uncharacterized protein LOC558619

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001044870.1 → NP_001038335.1 uncharacterized protein LOC558619 precursor

Status: PREDICTED

Source sequence(s)

BX465868

UniProtKB/TrEMBL

A0A8M1N9E4, Q1LXB2

Related

ENSDARP00000119549.2, ENSDART00000140736.3

Conserved Domains (2) summary

pfam13908
Location:46 → 129

Shisa; Wnt and FGF inhibitory regulator

cl23807
Location:185 → 261

WWbp; WW-domain ligand protein