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wdr47a WD repeat domain 47a [ Danio rerio (zebrafish) ]

Gene ID: 558528, updated on 27-Mar-2024

Summary

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Official Symbol
wdr47aprovided by ZNC
Official Full Name
WD repeat domain 47aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-070216-3
See related
Ensembl:ENSDARG00000078136 AllianceGenome:ZFIN:ZDB-GENE-070216-3
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wdr47; si:ch211-66k16.12
Summary
Orthologous to human WDR47 (WD repeat domain 47). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
15
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (45382439..45419709)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (45529420..45566911)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103910115 Neighboring gene calmodulin regulated spectrin-associated protein family, member 2b Neighboring gene sterile alpha motif domain-containing protein 9-like Neighboring gene si:ch211-66k16.27 Neighboring gene si:ch211-66k16.2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
WD repeat-containing protein 47
Names
WD repeat domain 47

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    45382439..45419709
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001922584.7 → XP_001922619.3  WD repeat-containing protein 47

    UniProtKB/TrEMBL
    A0A8M1QV96, E7F4B9, E9QJP1
    Related
    ENSDARP00000118278.2, ENSDART00000142251.3
    Conserved Domains (3) summary
    smart00668
    Location:47 → 102
    CTLH; C-terminal to LisH motif
    cd00200
    Location:589 → 898
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:594 → 642
    7WD40; WD40 repeat [structural motif]

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394513.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    232888..279274
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021471290.1 → XP_021326965.1  WD repeat-containing protein 47

    UniProtKB/TrEMBL
    A0A8M1QV96, E7F4B9, E9QJP1
    Conserved Domains (3) summary
    smart00668
    Location:47 → 102
    CTLH; C-terminal to LisH motif
    cd00200
    Location:589 → 898
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:594 → 642
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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