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zgc:110410 zgc:110410 [ Danio rerio (zebrafish) ]

Gene ID: 553618, updated on 18-Sep-2024

Summary

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Official Symbol
zgc:110410provided by ZNC
Official Full Name
zgc:110410provided by ZNC
Primary source
ZFIN:ZDB-GENE-050522-465
See related
Ensembl:ENSDARG00000055138 AllianceGenome:ZFIN:ZDB-GENE-050522-465
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in intestinal bulb and intestine. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See zgc:110410 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (25599376..25606973, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (25684344..25692234, complement)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137487906 Neighboring gene ataxin 1b Neighboring gene family with sequence similarity 8 member A1b Neighboring gene zinc fingers and homeoboxes 2a Neighboring gene derlin 1 Neighboring gene NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Morphological and molecular evidence for functional organization along the rostrocaudal axis of the adult zebrafish intestine. Wang Z, et al. BMC Genomics, 2010 Jun 22. PMID 20565988, Free PMC Article
  2. An osteosarcoma zebrafish model implicates Mmp-19 and Ets-1 as well as reduced host immune response in angiogenesis and migration. Mohseny AB, et al. J Pathol, 2012 Jun. PMID 22297719
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC110410

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables calcium channel activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC553618

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001328372.2 → NP_001315301.1  uncharacterized protein LOC553618

    Status: VALIDATED

    Source sequence(s)
    CR848673
    UniProtKB/TrEMBL
    A0A2R8PVR6, A0A8M1P9U8
    Related
    ENSDARP00000144915.1, ENSDART00000192602.1
    Conserved Domains (2) summary
    cd10428
    Location:186 → 402
    LFG_like; Proteins similar to and including lifeguard (LFG), a putative regulator of apoptosis
    pfam02084
    Location:89 → 171
    Bindin; Bindin

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    25599376..25606973 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001020592.1: Suppressed sequence

    Description
    NM_001020592.1: This RefSeq has been removed because currently there is insufficient support for the transcript and protein.
Nucleotide Protein Strain
Heading Accession and Version

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