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LOC5521180 vacuolar protein sorting-associated protein 16 homolog [ Nematostella vectensis (starlet sea anemone) ]

Gene ID: 5521180, updated on 6-Jun-2024

Summary

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Gene symbol
LOC5521180
Gene description
vacuolar protein sorting-associated protein 16 homolog
Locus tag
NEMVEDRAFT_v1g228040
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematostella vectensis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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Genomic context

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See LOC5521180 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
24
Annotation release Status Assembly Chr Location
101 current jaNemVect1.1 (GCF_932526225.1) 2 NC_064035.1 (10273145..10289809)
100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834409.1 (1419590..1436329, complement)

Chromosome 2 - NC_064035.1Genomic Context describing neighboring genes Neighboring gene ribonuclease kappa-B Neighboring gene peptidyl-prolyl cis-trans isomerase G Neighboring gene semaphorin-5B Neighboring gene lysine-specific demethylase 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vacuole fusion, non-autophagic IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of HOPS complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 16 homolog
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference jaNemVect1.1

Genomic

  1. NC_064035.1 Reference jaNemVect1.1

    Range
    10273145..10289809
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032366519.2 → XP_032222410.2  vacuolar protein sorting-associated protein 16 homolog isoform X1

    UniProtKB/TrEMBL
    A7RHU4

  2. XM_032366520.2 → XP_032222411.2  vacuolar protein sorting-associated protein 16 homolog isoform X2

    UniProtKB/TrEMBL
    A7RHU4
Nucleotide Protein
Heading Accession and Version

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