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spt4 Transcription elongation factor subunit spt4 [ Apis mellifera (honey bee) ]

Gene ID: 552076, updated on 16-May-2024

Summary

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Gene symbol
spt4
Gene description
Transcription elongation factor subunit spt4
Gene type
protein coding
RefSeq status
MODEL
Organism
Apis mellifera
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
Also known as
GB51483
Orthologs
fruit fly all
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Genomic context

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See spt4 in Genome Data Viewer
Location:
chromosome: LG3
Exon count:
5
Annotation release Status Assembly LG Location
104 current Amel_HAv3.1 (GCF_003254395.2) LG3 NC_037640.1 (4585134..4587496)
103 previous assembly Amel_4.5 (GCF_000002195.4) LG3 NC_007072.3 (3725827..3728128, complement)

Linkage Group LG3 - NC_037640.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC413858 Neighboring gene uncharacterized LOC102653989 Neighboring gene geminin Neighboring gene synergin gamma Neighboring gene uncharacterized LOC102656758 Neighboring gene mago, exon junction complex subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential expression of endogenous plant cell wall degrading enzyme genes in the stick insect (Phasmatodea) midgut. Shelomi M, et al. BMC Genomics, 2014 Oct 21. PMID 25331961, Free PMC Article
  2. Insights into social insects from the genome of the honeybee Apis mellifera. Honeybee Genome Sequencing Consortium. Nature, 2006 Oct 26. PMID 17073008, Free PMC Article
  3. ProtoBee: hierarchical classification and annotation of the honey bee proteome. Kaplan N, et al. Genome Res, 2006 Nov. PMID 17065614, Free PMC Article
  4. Finding the missing honey bee genes: lessons learned from a genome upgrade. Elsik CG, et al. BMC Genomics, 2014 Jan 30. PMID 24479613, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription, elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DSIF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription elongation factor SPT4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apis mellifera Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Amel_HAv3.1 Primary Assembly

Genomic

  1. NC_037640.1 Reference Amel_HAv3.1 Primary Assembly

    Range
    4585134..4587496
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_624454.6 → XP_624457.1  transcription elongation factor SPT4

    See identical proteins and their annotated locations for XP_624457.1

    UniProtKB/TrEMBL
    A0A7M7RBD8, A0A8B9B1Z7
    Conserved Domains (1) summary
    cd07973
    Location:11 → 108
    Spt4; Transcription elongation factor Spt4
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases