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LOC5519066 receptor-type tyrosine-protein phosphatase F [ Nematostella vectensis (starlet sea anemone) ]

Gene ID: 5519066, updated on 30-Nov-2023

Summary

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Gene symbol
LOC5519066
Gene description
receptor-type tyrosine-protein phosphatase F
Locus tag
NEMVEDRAFT_v1g136261
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematostella vectensis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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Genomic context

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Location:
chromosome: 1
Exon count:
51
Annotation release Status Assembly Chr Location
101 current jaNemVect1.1 (GCF_932526225.1) 1 NC_064034.1 (5894453..5945784, complement)
100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834397.1 (1507728..1517080)

Chromosome 1 - NC_064034.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC5519068 Neighboring gene ATP-dependent RNA helicase DED1 Neighboring gene receptor-type tyrosine-protein phosphatase S Neighboring gene receptor-type tyrosine-protein phosphatase epsilon Neighboring gene receptor-type tyrosine-protein phosphatase F Neighboring gene uncharacterized LOC5502674

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
receptor-type tyrosine-protein phosphatase F; receptor-type tyrosine-protein phosphatase S
Names
lactadherin
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference jaNemVect1.1

Genomic

  1. NC_064034.1 Reference jaNemVect1.1

    Range
    5894453..5945784 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048723405.1 → XP_048579362.1  receptor-type tyrosine-protein phosphatase S isoform X2

  2. XM_048723411.1 → XP_048579368.1  receptor-type tyrosine-protein phosphatase S isoform X3

  3. XM_048723419.1 → XP_048579376.1  receptor-type tyrosine-protein phosphatase F isoform X4

  4. XM_048723430.1 → XP_048579387.1  receptor-type tyrosine-protein phosphatase S isoform X5

  5. XM_048723402.1 → XP_048579359.1  receptor-type tyrosine-protein phosphatase S isoform X1

Nucleotide Protein
Heading Accession and Version

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