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LOC5515355 E3 ubiquitin-protein ligase LRSAM1 [ Nematostella vectensis (starlet sea anemone) ]

Gene ID: 5515355, updated on 30-Nov-2023

Summary

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Gene symbol
LOC5515355
Gene description
E3 ubiquitin-protein ligase LRSAM1
Locus tag
NEMVEDRAFT_v1g241634
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematostella vectensis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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Genomic context

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See LOC5515355 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
27
Annotation release Status Assembly Chr Location
101 current jaNemVect1.1 (GCF_932526225.1) 8 NC_064041.1 (11479588..11494146, complement)
100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834366.1 (724241..740946, complement)

Chromosome 8 - NC_064041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116619804 Neighboring gene uncharacterized LOC116619790 Neighboring gene proteoglycan 4 Neighboring gene uncharacterized LOC5515319 Neighboring gene dual specificity mitogen-activated protein kinase kinase 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase LRSAM1
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference jaNemVect1.1

Genomic

  1. NC_064041.1 Reference jaNemVect1.1

    Range
    11479588..11494146 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032384957.2 → XP_032240848.1  E3 ubiquitin-protein ligase LRSAM1 isoform X2

    UniProtKB/TrEMBL
    A7RYU6
    Conserved Domains (5) summary
    cd09523
    Location:546 → 610
    SAM_TAL; SAM domain of TAL subfamily
    COG4886
    Location:34 → 204
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    COG5281
    Location:251 → 547
    COG5281; Phage-related minor tail protein [Mobilome: prophages, transposons]
    sd00033
    Location:34 → 53
    LRR_RI; leucine-rich repeat [structural motif]
    cd16515
    Location:656 → 694
    RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins

  2. XM_032384956.2 → XP_032240847.1  E3 ubiquitin-protein ligase LRSAM1 isoform X1

    UniProtKB/TrEMBL
    A7RYU6
    Conserved Domains (5) summary
    cd09523
    Location:556 → 620
    SAM_TAL; SAM domain of TAL subfamily
    COG1196
    Location:233 → 530
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG4886
    Location:34 → 261
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:34 → 53
    LRR_RI; leucine-rich repeat [structural motif]
    cd16515
    Location:666 → 704
    RING-HC_LRSAM1; RING finger, HC subclass, found in leucine-rich repeat and sterile alpha motif-containing protein 1 (LRSAM1) and similar proteins
Nucleotide Protein
Heading Accession and Version

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