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LOC5505649 potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 [ Nematostella vectensis (starlet sea anemone) ]

Gene ID: 5505649, updated on 30-Nov-2023

Summary

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Gene symbol
LOC5505649
Gene description
potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2
Locus tag
NEMVEDRAFT_v1g126312
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematostella vectensis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
Also known as
HCN2
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Genomic context

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See LOC5505649 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
101 current jaNemVect1.1 (GCF_932526225.1) 5 NC_064038.1 (10036393..10046081)
100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834184.1 (254156..264670, complement)

Chromosome 5 - NC_064038.1Genomic Context describing neighboring genes Neighboring gene degenerin deg-1 Neighboring gene neuroplastin Neighboring gene uncharacterized LOC125563040 Neighboring gene cannabinoid receptor 2 Neighboring gene imidazole glycerol phosphate synthase hisHF, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Characterization of Cnidarian HCN Channels Points to an Early Evolution of Ih. Baker EC, et al. PLoS One, 2015. PMID 26555239, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables monoatomic ion channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference jaNemVect1.1

Genomic

  1. NC_064038.1 Reference jaNemVect1.1

    Range
    10036393..10046081
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001626366.3 → XP_001626416.2  potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2

    UniProtKB/TrEMBL
    A0A0S2KP17
    Conserved Domains (3) summary
    PLN03192
    Location:211 → 598
    PLN03192; Voltage-dependent potassium channel; Provisional
    cd00038
    Location:551 → 659
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
    pfam08412
    Location:178 → 219
    Ion_trans_N; Ion transport protein N-terminal
Nucleotide Protein
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