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SS1G_00971 hypothetical protein [ Sclerotinia sclerotiorum 1980 UF-70 ]

Gene ID: 5494351, updated on 16-Nov-2023

Summary

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Gene symbol
SS1G_00971
Gene description
hypothetical protein
Locus tag
SS1G_00971
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Sclerotinia sclerotiorum 1980 UF-70 (strain: 1980)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Leotiomycetes; Helotiales; Sclerotiniaceae; Sclerotinia
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Genomic context

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See SS1G_00971 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
5

NW_001820835.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_001820835.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001820835.1 Reference assembly

    Range
    2502294..2505654 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001598832.1 → XP_001598882.1  hypothetical protein SS1G_00971 [Sclerotinia sclerotiorum 1980 UF-70]

    See identical proteins and their annotated locations for XP_001598882.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1D9PXS6, A7E6P6
    Conserved Domains (4) summary
    COG1112
    Location:130 → 818
    DNA2; Superfamily I DNA and/or RNA helicase [Replication, recombination and repair]
    pfam09416
    Location:97 → 248
    UPF1_Zn_bind; RNA helicase (UPF2 interacting domain)
    pfam13087
    Location:661 → 818
    AAA_12; AAA domain
    pfam13245
    Location:467 → 515
    AAA_19; Part of AAA domain
Nucleotide Protein
Heading Accession and Version

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