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ubiad1 UbiA prenyltransferase domain containing 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 549292, updated on 25-Apr-2024

Summary

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Official Symbol
ubiad1provided by Xenbase
Official Full Name
UbiA prenyltransferase domain containing 1provided by Xenbase
Primary source
Xenbase:XB-GENE-963273
See related
Ensembl:ENSXETG00000017414
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See ubiad1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (65069383..65078316)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (39931642..39940573)

Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105947777 Neighboring gene mechanistic target of rapamycin kinase Neighboring gene angiopoietin like 7 Neighboring gene uncharacterized LOC116412183 Neighboring gene dispatched RND transporter family member 3, gene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables 4-hydroxybenzoate decaprenyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables antioxidant activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables prenyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables prenyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables prenyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within circulatory system development ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within endothelial cell development ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in menaquinone biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within menaquinone biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within menaquinone biosynthetic process ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within ubiquinone biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within ubiquinone biosynthetic process ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in vitamin K biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within vitamin K biosynthetic process ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
is_active_in Golgi membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane ISS
Inferred from Sequence or Structural Similarity
more info
  
is_active_in endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrial membrane IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ubiA prenyltransferase domain-containing protein 1
NP_001016538.1
XP_012822061.1
XP_012822063.1
XP_017950881.1
XP_031760949.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001016538.2 → NP_001016538.1  ubiA prenyltransferase domain-containing protein 1

    See identical proteins and their annotated locations for NP_001016538.1

    Status: PROVISIONAL

    Source sequence(s)
    CR760773
    UniProtKB/Swiss-Prot
    B3DLT5, B7ZSP1, Q28HR4
    UniProtKB/TrEMBL
    F6RHC8
    Conserved Domains (1) summary
    cd13962
    Location:59 → 335
    PT_UbiA_UBIAD1; 1,4-Dihydroxy-2-naphthoate octaprenyltransferase

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    65069383..65078316
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012966607.3 → XP_012822061.1  ubiA prenyltransferase domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_012822061.1

    UniProtKB/TrEMBL
    A0A6I8Q056, F6RHC8
    Conserved Domains (1) summary
    cd13962
    Location:84 → 360
    PT_UbiA_UBIAD1; 1,4-Dihydroxy-2-naphthoate octaprenyltransferase

  2. XM_018095392.2 → XP_017950881.1  ubiA prenyltransferase domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    F6RHC8
    Conserved Domains (1) summary
    cd13962
    Location:59 → 335
    PT_UbiA_UBIAD1; 1,4-Dihydroxy-2-naphthoate octaprenyltransferase

  3. XM_031905089.1 → XP_031760949.1  ubiA prenyltransferase domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6I8Q056, F6RHC8
    Related
    ENSXETP00000062202.3, ENSXETT00000064983.3
    Conserved Domains (1) summary
    cd13962
    Location:84 → 360
    PT_UbiA_UBIAD1; 1,4-Dihydroxy-2-naphthoate octaprenyltransferase

  4. XM_012966609.2 → XP_012822063.1  ubiA prenyltransferase domain-containing protein 1 isoform X2

    See identical proteins and their annotated locations for XP_012822063.1

    UniProtKB/TrEMBL
    F6RHC8
    Conserved Domains (1) summary
    cd13962
    Location:59 → 335
    PT_UbiA_UBIAD1; 1,4-Dihydroxy-2-naphthoate octaprenyltransferase
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q28HR4.1 GenPept UniProtKB/Swiss-Prot:Q28HR4

Gene LinkOut

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