gan gigaxonin [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: ganprovided by Xenbase
Official Full Name: gigaxoninprovided by Xenbase
Primary source: Xenbase:XB-GENE-1013088
See related: Ensembl:ENSXETG00000018044
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 4

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	4	NC_030680.2 (52557824..52598056, complement)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	4	NC_030680.1 (55062212..55103037, complement)

Chromosome 4 - NC_030680.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by Xenbase

Process	Evidence Code	Pubs
acts_upstream_of_or_within cytoskeleton organization	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: gigaxonin

Names: giant axonal neuropathy

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001016530.2 → NP_001016530.1 gigaxonin

Status: PROVISIONAL

Source sequence(s)

CR926181

UniProtKB/TrEMBL

A0A8J0PHZ4, B7ZTY6

Related

ENSXETP00000109222.1, ENSXETT00000114009.1

Conserved Domains (6) summary

smart00612
Location:325 → 371

Kelch; Kelch domain

PHA03098
Location:26 → 500

PHA03098; kelch-like protein; Provisional

sd00038
Location:313 → 357

Kelch; KELCH repeat [structural motif]

pfam00651
Location:17 → 122

BTB; BTB/POZ domain

pfam01344
Location:360 → 405

Kelch_1; Kelch motif

pfam07707
Location:131 → 232

BACK; BTB And C-terminal Kelch

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

Range

52557824..52598056 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_012961106.3 → XP_012816560.1 gigaxonin isoform X1

UniProtKB/TrEMBL

F6WU31, Q28CU8

Related

ENSXETP00000039112.5, ENSXETT00000039112.5

Conserved Domains (4) summary

PHA03098
Location:35 → 509

PHA03098; kelch-like protein; Provisional

sd00038
Location:322 → 366

Kelch; KELCH repeat [structural motif]

cd18245
Location:22 → 132

BTB_POZ_KLHL16_gigaxonin; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in gigaxonin

cd18455
Location:136 → 232

BACK_KLHL16_gigaxonin; BACK (BTB and C-terminal Kelch) domain found in Kelch-like protein 16 (KLHL16)