U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PVX_095320 DNA-directed RNA polymerase II largest subunit, putative [ Plasmodium vivax (malaria parasite P. vivax) ]

Gene ID: 5473819, updated on 17-May-2024

Summary

Go to the top of the page Help
Gene symbol
PVX_095320
Gene description
DNA-directed RNA polymerase II largest subunit, putative
Primary source
PlasmoDB:PVX_095320
Locus tag
PVX_095320
See related
VEuPathDB:PVX_095320
Gene type
protein coding
RNA name
DNA-directed RNA polymerase II largest subunit, putative
RefSeq status
PROVISIONAL
Organism
Plasmodium vivax (strain: Salvador I)
Lineage
Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Plasmodium)
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See PVX_095320 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
1
Sequence:
Chromosome: 8; NC_009913.1 (1000860..1007999, complement)

Chromosome 8 - NC_009913.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene stomatin-like protein, putative Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_009913.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Comparative genomics of the neglected human malaria parasite Plasmodium vivax. Carlton JM, et al. Nature, 2008 Oct 9. PMID 18843361, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
DNA-directed RNA polymerase II largest subunit, putative
XP_001614530.1
  • encoded by transcript PVX_095320A

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009913.1 Reference assembly

    Range
    1000860..1007999 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001614480.1 → XP_001614530.1  DNA-directed RNA polymerase II largest subunit, putative [Plasmodium vivax]

    See identical proteins and their annotated locations for XP_001614530.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S4HED1, A5K7P4
    Conserved Domains (6) summary
    PRK08566
    Location:15 → 1016
    PRK08566; DNA-directed RNA polymerase subunit A'; Validated
    cd02733
    Location:18 → 980
    RNAP_II_RPB1_N; Largest subunit (Rpb1) of eukaryotic RNA polymerase II (RNAP II), N-terminal domain
    cl11429
    Location:1742 → 1962
    RNAP_largest_subunit_C; Largest subunit of RNA polymerase (RNAP), C-terminal domain
    pfam04992
    Location:1000 → 1334
    RNA_pol_Rpb1_6; RNA polymerase Rpb1, domain 6
    pfam04998
    Location:934 → 1913
    RNA_pol_Rpb1_5; RNA polymerase Rpb1, domain 5
    pfam09786
    Location:2192 → 2322
    CytochromB561_N; Cytochrome B561, N terminal
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases