Gm5934 predicted gene 5934 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Gm5934provided by MGI
Official Full Name: predicted gene 5934provided by MGI
Primary source: MGI:MGI:3643862
See related: Ensembl:ENSMUSG00000084063 AllianceGenome:MGI:3643862
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: EG546272
Summary: Predicted to be involved in meiotic cell cycle and spermatid development. Predicted to be active in synaptonemal complex. Human ortholog(s) of this gene implicated in spermatogenic failure 4. Orthologous to human SYCP3 (synaptonemal complex protein 3). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Low expression observed in reference dataset See more
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Genomic context

Location:: X A2; X 17.59 cM

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	X	NC_000086.8 (24340547..24365402, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	X	NC_000086.7 (24474308..24499163, complement)

Chromosome X - NC_000086.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in meiotic cell cycle	IBA Inferred from Biological aspect of Ancestor more info
involved_in spermatid development	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in synaptonemal complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: uncharacterized protein LOC546272

Names: novel Xlr-related, meiosis regulated (Xmr) family protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001100444.2 → NP_001093914.1 uncharacterized protein LOC546272

Status: PREDICTED

Source sequence(s)

AL671211

Consensus CDS

CCDS53020.1

UniProtKB/TrEMBL

D3Z4U6

Related

ENSMUSP00000113623.2, ENSMUST00000120734.2

Conserved Domains (1) summary

pfam04803
Location:130 → 209

Cor1; Cor1/Xlr/Xmr conserved region