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Gm5820 predicted gene 5820 [ Mus musculus (house mouse) ]

Gene ID: 545253, updated on 17-Aug-2024

Summary

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Official Symbol
Gm5820provided by MGI
Official Full Name
predicted gene 5820provided by MGI
Primary source
MGI:MGI:3646292
See related
Ensembl:ENSMUSG00000117994 AllianceGenome:MGI:3646292
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG545253
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
18 B3; 18 20.87 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (39025509..39114676)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (38892456..38981623)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 26 Neighboring gene predicted gene, 19774 Neighboring gene ribosomal protein S2 pseudogene Neighboring gene STARR-seq mESC enhancer starr_44384 Neighboring gene STARR-seq mESC enhancer starr_44387 Neighboring gene fibroblast growth factor 1 Neighboring gene STARR-seq mESC enhancer starr_44390 Neighboring gene STARR-positive B cell enhancer ABC_E10987 Neighboring gene STARR-positive B cell enhancer ABC_E4246 Neighboring gene predicted gene, 52330 Neighboring gene STARR-seq mESC enhancer starr_44392 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:39242828-39243011 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:39243680-39243789 Neighboring gene STARR-seq mESC enhancer starr_44393 Neighboring gene STARR-seq mESC enhancer starr_44394 Neighboring gene STARR-seq mESC enhancer starr_44395 Neighboring gene STARR-seq mESC enhancer starr_44397 Neighboring gene STARR-seq mESC enhancer starr_44398 Neighboring gene STARR-seq mESC enhancer starr_44400 Neighboring gene predicted gene 15337

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC545253

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033789.2 → NP_001028961.1  uncharacterized protein LOC545253

    See identical proteins and their annotated locations for NP_001028961.1

    Status: VALIDATED

    Source sequence(s)
    AC110730, AK145364
    UniProtKB/TrEMBL
    Q3ULQ8
    Related
    ENSMUST00000115580.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    39025509..39114676
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036161214.1 → XP_036017107.1  uncharacterized protein LOC545253 isoform X2

  2. XM_036161215.1 → XP_036017108.1  uncharacterized protein LOC545253 isoform X2

  3. XM_017317953.2 → XP_017173442.1  uncharacterized protein LOC545253 isoform X3

  4. XM_036161216.1 → XP_036017109.1  uncharacterized protein LOC545253 isoform X4

  5. XM_017317952.2 → XP_017173441.1  uncharacterized protein LOC545253 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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