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Bcmde1 Bcmde1 [ Botrytis cinerea B05.10 ]

Gene ID: 5441691, updated on 6-Jun-2024

Summary

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Gene symbol
Bcmde1
Gene description
Bcmde1
Locus tag
BCIN_01g08310
Gene type
protein coding
RNA name
Bcmde1
RefSeq status
PROVISIONAL
Organism
Botrytis cinerea B05.10 (strain: B05.10)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Leotiomycetes; Helotiales; Sclerotiniaceae; Botrytis
Old locus tag
BC1G_00083
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Genomic context

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See Bcmde1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_037310.1 (2914100..2915959, complement)

Chromosome 1 - NC_037310.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene Bccne1 Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037310.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A gapless genome sequence of the fungus Botrytis cinerea. Van Kan JA, et al. Mol Plant Pathol, 2017 Jan. PMID 26913498, Free PMC Article
  2. Genome update of Botrytis cinerea strains B05.10 and T4. Staats M, et al. Eukaryot Cell, 2012 Nov. PMID 23104368, Free PMC Article
  3. Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea. Amselem J, et al. PLoS Genet, 2011 Aug. PMID 21876677, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methylthioribulose 1-phosphate dehydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-methionine salvage from methylthioadenosine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Bcmde1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_037310.1 Reference assembly

    Range
    2914100..2915959 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001560948.2 → XP_001560998.1  Bcmde1 [Botrytis cinerea B05.10]

    See identical proteins and their annotated locations for XP_001560998.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A0A384J6T4, A6RI12
    UniProtKB/TrEMBL
    G2XZN0, M7US55
    Conserved Domains (1) summary
    cl00214
    Location:29 → 237
    Aldolase_II; Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A6RI12.1

Gene LinkOut

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Molecular Biology Databases
Research Materials