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LOC541966 empty pericarp 2 [ Zea mays ]

Gene ID: 541966, updated on 14-Dec-2023

Summary

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Gene symbol
LOC541966
Gene description
empty pericarp 2
Locus tag
ZEAMMB73_Zm00001d005675
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
emp2; hsbp1; Zmhsbp1; GRMZM2G039155
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Genomic context

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See LOC541966 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 2 NC_050097.1 (182636785..182641219, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 2 NC_024460.2 (183064234..183068668, complement)

Chromosome 2 - NC_050097.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112694681 Neighboring gene enolase Neighboring gene Thioesterase superfamily protein Neighboring gene uncharacterized LOC103647385

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Empty pericarp2 encodes a negative regulator of the heat shock response and is required for maize embryogenesis. Fu S, et al. Plant Cell, 2002 Dec. PMID 12468731, Free PMC Article
  2. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
  3. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  4. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  5. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular heat acclimation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
empty pericarp 2
Names
AY108804_IDP
GTP binding protein
PCO063114
Pentatricopeptide repeat-containing protein mitochondrial
dek*-1047
dek*-Mu1047
dek1047
heat shock binding factor protein
heat shock factor-binding protein 1
isu9
mpz507-3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001111620.2 → NP_001105090.1  empty pericarp 2 isoform 1

    See identical proteins and their annotated locations for NP_001105090.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) has five exons with long first intron due to splice donor choice.
    Source sequence(s)
    BQ528249, EU964487
    UniProtKB/TrEMBL
    Q8RUA7
    Conserved Domains (1) summary
    pfam06825
    Location:12 → 61
    HSBP1; Heat shock factor binding protein 1

  2. NM_001158983.2 → NP_001152455.2  empty pericarp 2 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has six exons.
    Source sequence(s)
    AY108804, CABHLF010000001, EU975593
    UniProtKB/TrEMBL
    B6UEC8
    Conserved Domains (3) summary
    sd00004
    Location:221 → 248
    PPR; PPR repeat [structural motif]
    pfam06825
    Location:389 → 438
    HSBP1; Heat shock factor binding protein 1
    cl25449
    Location:238 → 385
    PPR_2; PPR repeat family

  3. NM_001365626.1 → NP_001352555.1  empty pericarp 2 isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has five exons with the short first intron due to splice donor choice.
    Source sequence(s)
    AY108804, DN220893
    UniProtKB/TrEMBL
    A0A1D6EPE8
    Conserved Domains (1) summary
    pfam06825
    Location:53 → 102
    HSBP1; Heat shock factor binding protein 1

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050097.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    182636785..182641219 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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