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LOC541626 ferredoxin [ Zea mays ]

Gene ID: 541626, updated on 14-Dec-2023

Summary

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Gene symbol
LOC541626
Gene description
ferredoxin
Locus tag
ZEAMMB73_Zm00001d042049
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
L-FNRII; GRMZM2G059083
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Genomic context

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Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 3 NC_050098.1 (149357107..149359360, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 3 NC_024461.2 (148586147..148588386, complement)

Chromosome 3 - NC_050098.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103650714 Neighboring gene ferredoxin--NADP reductase, leaf isozyme 1 - pseudogene Neighboring gene uncharacterized LOC100275802 Neighboring gene putative inactive leucine-rich repeat receptor-like protein kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. N-terminal structure of maize ferredoxin:NADP+ reductase determines recruitment into different thylakoid membrane complexes. Twachtmann M, et al. Plant Cell, 2012 Jul. PMID 22805436, Free PMC Article
  2. Differential interaction of maize root ferredoxin:NADP(+) oxidoreductase with photosynthetic and non-photosynthetic ferredoxin isoproteins. Onda Y, et al. Plant Physiol, 2000 Jul. PMID 10889253, Free PMC Article
  3. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
  4. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  5. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The crystal structures of all three ferredoxin:NADP(+) reductase (FNRs) were solved, revealing major structural differences at the N-terminal domain and dimer interface.
    Title: N-terminal structure of maize ferredoxin:NADP+ reductase determines recruitment into different thylakoid membrane complexes.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ferredoxin
Names
ferredoxin--NADP reductase, leaf isozyme

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001111381.1 → NP_001104851.1  ferredoxin

    See identical proteins and their annotated locations for NP_001104851.1

    Status: PROVISIONAL

    Source sequence(s)
    AB035645
    UniProtKB/TrEMBL
    B4FN63, Q9SLP5
    Conserved Domains (1) summary
    PLN03115
    Location:41 → 368
    PLN03115; ferredoxin--NADP(+) reductase; Provisional

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050098.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    149357107..149359360 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020550045.2 → XP_020405634.1  ferredoxin isoform X1

    UniProtKB/TrEMBL
    A0A804N7C8, B4FN63
    Conserved Domains (1) summary
    cl27655
    Location:41 → 342
    FAD_binding_1; FAD binding domain
Nucleotide Protein
Heading Accession and Version

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