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SPTY2D1 SPT2 chromatin protein domain containing 1 [ Bos taurus (cattle) ]

Gene ID: 539967, updated on 5-Mar-2024

Summary

Official Symbol
SPTY2D1provided by VGNC
Official Full Name
SPT2 chromatin protein domain containing 1provided by VGNC
Primary source
VGNC:VGNC:35261
See related
BGD:BT15976; Ensembl:ENSBTAG00000001660
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
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Genomic context

See SPTY2D1 in Genome Data Viewer
Location:
chromosome: 29
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 29 NC_037356.1 (26103453..26119994)

Chromosome 29 - NC_037356.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 86A Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene mitochondrial sheath formation associated Neighboring gene UEV and lactate/malate dehyrogenase domains Neighboring gene NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like

Genomic regions, transcripts, and products

Genomic Sequence:
NC_037356.1 Chromosome 29 Reference ARS-UCD2.0 Primary Assembly

General gene information

Markers

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in nucleosome assembly IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
protein SPT2 homolog
Names
SPT2, Suppressor of Ty, domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001205738.1NP_001192667.1  protein SPT2 homolog

    See identical proteins and their annotated locations for NP_001192667.1

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000029
    UniProtKB/TrEMBL
    E1BBR9
    Related
    ENSBTAP00000002177.5, ENSBTAT00000002177.5
    Conserved Domains (1) summary
    pfam08243
    Location:600663
    SPT2; SPT2 chromatin protein

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037356.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    26103453..26119994
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)