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ZBTB18 zinc finger and BTB domain containing 18 [ Bos taurus (cattle) ]

Gene ID: 538793, updated on 5-Mar-2024

Summary

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Official Symbol
ZBTB18provided by VGNC
Official Full Name
zinc finger and BTB domain containing 18provided by VGNC
Primary source
VGNC:VGNC:37063
See related
BGD:BT24382; Ensembl:ENSBTAG00000000385
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
ZNF238
Orthologs
human mouse all
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Genomic context

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See ZBTB18 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 16 NC_037343.1 (33149467..33157991, complement)

Chromosome 16 - NC_037343.1Genomic Context describing neighboring genes Neighboring gene chromosome 16 C1orf100 homolog Neighboring gene U6 spliceosomal RNA Neighboring gene AKT serine/threonine kinase 3 Neighboring gene SHH signaling and ciliogenesis regulator SDCCAG8 Neighboring gene centrosomal protein 170

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037343.1 Chromosome 16 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC142551

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 18
Names
zinc finger protein 238

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001078016.1 → NP_001071484.1  zinc finger and BTB domain-containing protein 18

    See identical proteins and their annotated locations for NP_001071484.1

    Status: PROVISIONAL

    Source sequence(s)
    BC126550
    UniProtKB/TrEMBL
    A0A140T829
    Related
    ENSBTAP00000000497.5, ENSBTAT00000000497.6
    Conserved Domains (4) summary
    COG5048
    Location:303 → 490
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:421 → 441
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18324
    Location:10 → 156
    BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
    pfam13465
    Location:434 → 456
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037343.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    33149467..33157991 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024976367.2 → XP_024832135.1  zinc finger and BTB domain-containing protein 18 isoform X1

    UniProtKB/TrEMBL
    A0A140T829
    Conserved Domains (4) summary
    COG5048
    Location:303 → 490
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:421 → 441
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18324
    Location:10 → 156
    BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
    pfam13465
    Location:434 → 456
    zf-H2C2_2; Zinc-finger double domain

  2. XM_059875463.1 → XP_059731446.1  zinc finger and BTB domain-containing protein 18 isoform X2

    UniProtKB/TrEMBL
    A0A3Q1NED1
    Related
    ENSBTAP00000069945.1, ENSBTAT00000076393.2
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0JN76.2 GenPept UniProtKB/Swiss-Prot:A0JN76

Gene LinkOut

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