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RRP45 3'-5'-exoribonuclease [ Lodderomyces elongisporus ]

Gene ID: 5233048, updated on 11-Apr-2024

Summary

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Gene symbol
RRP45
Gene description
3'-5'-exoribonuclease
Locus tag
PVL30_003603
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Lodderomyces elongisporus (strain: NRRL YB-4239, culture-collection: ATCC:11503, culture-collection: NRRL:YB-4239, type-material: culture from holotype of Saccharomyces elongisporus)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida/Lodderomyces clade; Lodderomyces
Old locus tag
LELG_02759
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Genomic context

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See RRP45 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_083676.1 (1222187..1223212, complement)

Chromosome 4 - NC_083676.1Genomic Context describing neighboring genes Neighboring gene sulfurtransferase Neighboring gene CSG1/SUR1-like protein Neighboring gene Synaptotagmin-like protein 2 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_083676.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 3'-UTR AU-rich region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in TRAMP-dependent tRNA surveillance pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U1 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U4 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U5 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear mRNA surveillance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
3'-5'-exoribonuclease
XP_001526201.1
  • BUSCO:EOG09264398

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_083676.1 Reference assembly

    Range
    1222187..1223212 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001526151.1 → XP_001526201.1  3'-5'-exoribonuclease [Lodderomyces elongisporus]

    See identical proteins and their annotated locations for XP_001526201.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A5DZH2
    Conserved Domains (2) summary
    cd11368
    Location:7 → 314
    RNase_PH_RRP45; RRP45 subunit of eukaryotic exosome
    COG2123
    Location:1 → 321
    Rrp42; Exosome complex RNA-binding protein Rrp42, RNase PH superfamily [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

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Research Materials