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PKP3 plakophilin 3 [ Bos taurus (domestic cattle) ]

Gene ID: 516247, updated on 18-Aug-2024

Summary

Official Symbol
PKP3provided by VGNC
Official Full Name
plakophilin 3provided by VGNC
Primary source
VGNC:VGNC:32951
See related
Ensembl:ENSBTAG00000048098
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
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Genomic context

Location:
chromosome: 29
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 29 NC_037356.1 (50878615..50886978, complement)

Chromosome 29 - NC_037356.1Genomic Context describing neighboring genes Neighboring gene anoctamin 9 Neighboring gene single Ig and TIR domain containing Neighboring gene beta-1,4-N-acetyl-galactosaminyltransferase 4 Neighboring gene interferon induced transmembrane protein 3

Genomic regions, transcripts, and products

Genomic Sequence:
NC_037356.1 Chromosome 29 Reference ARS-UCD2.0 Primary Assembly

General gene information

Clone Names

  • MGC142697

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001076858.1NP_001070326.1  plakophilin-3

    See identical proteins and their annotated locations for NP_001070326.1

    Status: PROVISIONAL

    Source sequence(s)
    BC123626
    UniProtKB/Swiss-Prot
    Q08DQ0
    Conserved Domains (2) summary
    cd00020
    Location:318429
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:318343
    ARM; armadillo repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037356.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    50878615..50886978 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005227345.5XP_005227402.1  plakophilin-3 isoform X1

    UniProtKB/TrEMBL
    A0A452DJL3
    Related
    ENSBTAP00000055960.3, ENSBTAT00000065717.3
    Conserved Domains (2) summary
    cd00020
    Location:333444
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:333358
    ARM; armadillo repeat [structural motif]