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IFT88 intraflagellar transport 88 [ Bos taurus (cattle) ]

Gene ID: 514177, updated on 6-Jun-2024

Summary

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Official Symbol
IFT88provided by VGNC
Official Full Name
intraflagellar transport 88provided by VGNC
Primary source
VGNC:VGNC:30074
See related
BGD:BT22776; Ensembl:ENSBTAG00000014286
Gene type
protein coding
RefSeq status
INFERRED
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See IFT88 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 12 NC_037339.1 (35853118..35914399, complement)

Chromosome 12 - NC_037339.1Genomic Context describing neighboring genes Neighboring gene EEF1A lysine methyltransferase 1 Neighboring gene uncharacterized LOC132346770 Neighboring gene interleukin 17D Neighboring gene crystallin lambda 1 Neighboring gene snRNA-activating protein complex subunit 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037339.1 Chromosome 12 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. IFT20 links kinesin II with a mammalian intraflagellar transport complex that is conserved in motile flagella and sensory cilia. Baker SA, et al. J Biol Chem, 2003 Sep 5. PMID 12821668
  2. RPGR-ORF15, which is mutated in retinitis pigmentosa, associates with SMC1, SMC3, and microtubule transport proteins. Khanna H, et al. J Biol Chem, 2005 Sep 30. PMID 16043481, Free PMC Article
  3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables kinesin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in inner ear receptor cell stereocilium organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intraciliary transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in kidney development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in non-motile cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centriole IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary base IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in non-motile cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
intraflagellar transport protein 88 homolog
Names
intraflagellar transport 88 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001110786.3 → NP_001104256.2  intraflagellar transport protein 88 homolog

    Status: INFERRED

    Source sequence(s)
    NKLS02000012
    UniProtKB/TrEMBL
    E1BLX1
    Conserved Domains (2) summary
    sd00006
    Location:485 → 513
    TPR; TPR repeat [structural motif]
    cl26002
    Location:213 → 692
    TPR_11; TPR repeat

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037339.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    35853118..35914399 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005213777.5 → XP_005213834.1  intraflagellar transport protein 88 homolog isoform X3

    UniProtKB/TrEMBL
    A0A3Q1MMQ6
    Related
    ENSBTAP00000073104.2, ENSBTAT00000067455.2
    Conserved Domains (7) summary
    COG0457
    Location:392 → 650
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:448 → 476
    TPR; TPR repeat [structural motif]
    cd15832
    Location:478 → 511
    SNAP; TPR repeat [structural motif]
    pfam00515
    Location:201 → 228
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:162 → 223
    TPR_11; TPR repeat
    pfam13424
    Location:194 → 267
    TPR_12; Tetratricopeptide repeat
    cl24038
    Location:464 → 686
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

  2. XM_005213776.5 → XP_005213833.1  intraflagellar transport protein 88 homolog isoform X2

    UniProtKB/TrEMBL
    A0A3Q1MNB3
    Related
    ENSBTAP00000073403.2, ENSBTAT00000078675.2
    Conserved Domains (5) summary
    COG0457
    Location:410 → 668
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:466 → 494
    TPR; TPR repeat [structural motif]
    cd15832
    Location:496 → 529
    SNAP; TPR repeat [structural motif]
    pfam00515
    Location:219 → 246
    TPR_1; Tetratricopeptide repeat
    cl24038
    Location:482 → 704
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

  3. XM_005213778.5 → XP_005213835.1  intraflagellar transport protein 88 homolog isoform X1

    See identical proteins and their annotated locations for XP_005213835.1

    UniProtKB/TrEMBL
    E1BLX1
    Conserved Domains (2) summary
    sd00006
    Location:485 → 513
    TPR; TPR repeat [structural motif]
    cl26002
    Location:213 → 692
    TPR_11; TPR repeat

  4. XM_059892031.1 → XP_059748014.1  intraflagellar transport protein 88 homolog isoform X1

    UniProtKB/TrEMBL
    E1BLX1

  5. XM_005213775.5 → XP_005213832.1  intraflagellar transport protein 88 homolog isoform X1

    See identical proteins and their annotated locations for XP_005213832.1

    UniProtKB/TrEMBL
    E1BLX1
    Related
    ENSBTAP00000018980.5, ENSBTAT00000018980.7
    Conserved Domains (2) summary
    sd00006
    Location:485 → 513
    TPR; TPR repeat [structural motif]
    cl26002
    Location:213 → 692
    TPR_11; TPR repeat
Nucleotide Protein Strain
Heading Accession and Version

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Research Materials