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LOC510377 nuclear body protein SP140-like protein [ Bos taurus (cattle) ]

Gene ID: 510377, updated on 16-Jan-2024

Summary

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Gene symbol
LOC510377
Gene description
nuclear body protein SP140-like protein
See related
BGD:BT24881; Ensembl:ENSBTAG00000009664
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
SP140
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Genomic context

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See LOC510377 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
35
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (118232936..118314093)

Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene serine/arginine-rich splicing factor 9-like Neighboring gene SP110 nuclear body protein Neighboring gene uncharacterized LOC132343343 Neighboring gene SP100 nuclear antigen Neighboring gene SP140 nuclear body protein-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC140309

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear body protein SP140; nuclear body protein SP140-like protein
Names
SP140 nuclear body protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    118232936..118314093
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059879223.1 → XP_059735206.1  nuclear body protein SP140-like protein isoform X22

  2. XM_059879227.1 → XP_059735210.1  nuclear body protein SP140-like protein isoform X24

  3. XM_059879222.1 → XP_059735205.1  nuclear body protein SP140-like protein isoform X22

  4. XM_059879220.1 → XP_059735203.1  nuclear body protein SP140-like protein isoform X22

  5. XM_059879237.1 → XP_059735220.1  nuclear body protein SP140-like protein isoform X26

  6. XM_059879236.1 → XP_059735219.1  nuclear body protein SP140-like protein isoform X25

  7. XM_024981963.2 → XP_024837731.1  nuclear body protein SP140 isoform X29

    Related
    ENSBTAP00000079488.1, ENSBTAT00000130329.1
    Conserved Domains (5) summary
    pfam06390
    Location:202 → 370
    NESP55; Neuroendocrine-specific golgi protein P55 (NESP55)
    cd15626
    Location:618 → 658
    PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
    pfam01342
    Location:509 → 584
    SAND; SAND domain
    pfam03172
    Location:29 → 127
    HSR; HSR domain
    cl02556
    Location:683 → 784
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

  8. XM_059879241.1 → XP_059735224.1  nuclear body protein SP140-like protein isoform X28

  9. XM_024981991.2 → XP_024837759.1  nuclear body protein SP140 isoform X31

    Related
    ENSBTAP00000012738.6, ENSBTAT00000012738.6
    Conserved Domains (4) summary
    cd15626
    Location:591 → 631
    PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
    pfam01342
    Location:482 → 557
    SAND; SAND domain
    pfam03172
    Location:29 → 127
    HSR; HSR domain
    cl02556
    Location:656 → 757
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

  10. XM_059879247.1 → XP_059735230.1  nuclear body protein SP140-like protein isoform X30

  11. XM_024981994.2 → XP_024837762.1  nuclear body protein SP140-like protein isoform X32

    Conserved Domains (4) summary
    cd15626
    Location:563 → 603
    PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
    pfam01342
    Location:454 → 529
    SAND; SAND domain
    pfam03172
    Location:29 → 127
    HSR; HSR domain
    cl02556
    Location:628 → 729
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

  12. XM_059879238.1 → XP_059735221.1  nuclear body protein SP140 isoform X27

  13. XM_059879182.1 → XP_059735165.1  nuclear body protein SP140-like protein isoform X7

  14. XM_059879173.1 → XP_059735156.1  nuclear body protein SP140-like protein isoform X3

  15. XM_059879174.1 → XP_059735157.1  nuclear body protein SP140-like protein isoform X4

  16. XM_059879202.1 → XP_059735185.1  nuclear body protein SP140-like protein isoform X14

  17. XM_059879171.1 → XP_059735154.1  nuclear body protein SP140-like protein isoform X2

  18. XM_059879164.1 → XP_059735147.1  nuclear body protein SP140-like protein isoform X1

  19. XM_059879193.1 → XP_059735176.1  nuclear body protein SP140-like protein isoform X12

  20. XM_059879199.1 → XP_059735182.1  nuclear body protein SP140-like protein isoform X13

  21. XM_059879184.1 → XP_059735167.1  nuclear body protein SP140-like protein isoform X8

  22. XM_059879179.1 → XP_059735162.1  nuclear body protein SP140-like protein isoform X6

  23. XM_059879217.1 → XP_059735200.1  nuclear body protein SP140-like protein isoform X20

  24. XM_059879213.1 → XP_059735196.1  nuclear body protein SP140-like protein isoform X17

  25. XM_024981877.2 → XP_024837645.1  nuclear body protein SP140-like protein isoform X9

    Conserved Domains (5) summary
    PHA03169
    Location:379 → 562
    PHA03169; hypothetical protein; Provisional
    cd15626
    Location:782 → 822
    PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
    pfam01342
    Location:673 → 748
    SAND; SAND domain
    pfam03172
    Location:139 → 237
    HSR; HSR domain
    cl02556
    Location:847 → 948
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

  26. XM_059879187.1 → XP_059735170.1  nuclear body protein SP140-like protein isoform X10

  27. XM_059879204.1 → XP_059735187.1  nuclear body protein SP140-like protein isoform X15

  28. XM_059879177.1 → XP_059735160.1  nuclear body protein SP140-like protein isoform X5

  29. XM_059879216.1 → XP_059735199.1  nuclear body protein SP140-like protein isoform X19

  30. XM_024981907.2 → XP_024837675.1  nuclear body protein SP140-like protein isoform X16

    Conserved Domains (4) summary
    cd15626
    Location:752 → 792
    PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
    pfam01342
    Location:643 → 718
    SAND; SAND domain
    pfam03172
    Location:139 → 237
    HSR; HSR domain
    cl02556
    Location:817 → 918
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

  31. XM_059879189.1 → XP_059735172.1  nuclear body protein SP140-like protein isoform X11

  32. XM_059879219.1 → XP_059735202.1  nuclear body protein SP140-like protein isoform X21

  33. XM_059879214.1 → XP_059735197.1  nuclear body protein SP140-like protein isoform X18

  34. XM_024981934.2 → XP_024837702.1  nuclear body protein SP140 isoform X23

    Conserved Domains (4) summary
    cd15626
    Location:701 → 741
    PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
    pfam01342
    Location:592 → 667
    SAND; SAND domain
    pfam03172
    Location:139 → 237
    HSR; HSR domain
    cl02556
    Location:766 → 867
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

  35. XM_059879231.1 → XP_059735214.1  nuclear body protein SP140-like protein isoform X24

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001075447.1: Suppressed sequence

    Description
    NM_001075447.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from human: SP140 (GeneID:11262).
Nucleotide Protein Strain
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