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RPRD1A regulation of nuclear pre-mRNA domain containing 1A [ Bos taurus (cattle) ]

Gene ID: 504355, updated on 5-Mar-2024

Summary

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Official Symbol
RPRD1Aprovided by VGNC
Official Full Name
regulation of nuclear pre-mRNA domain containing 1Aprovided by VGNC
Primary source
VGNC:VGNC:34126
See related
BGD:BT14297; Ensembl:ENSBTAG00000005497
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
P15RS
Orthologs
human mouse all
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Genomic context

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See RPRD1A in Genome Data Viewer
Location:
chromosome: 24
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 24 NC_037351.1 (21051664..21120400)

Chromosome 24 - NC_037351.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 39 member 6 Neighboring gene uncharacterized LOC132343759 Neighboring gene chromosome 24 C18orf21 homolog Neighboring gene ribosomal biogenesis factor-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037351.1 Chromosome 24 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC139907

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II C-terminal domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, holoenzyme IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
regulation of nuclear pre-mRNA domain-containing protein 1A
Names
cyclin-dependent kinase 2B-inhibitor-related protein
cyclin-dependent kinase inhibitor 2B-related protein
p15INK4B-related protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001075156.1 → NP_001068624.1  regulation of nuclear pre-mRNA domain-containing protein 1A

    See identical proteins and their annotated locations for NP_001068624.1

    Status: PROVISIONAL

    Source sequence(s)
    BC119944
    UniProtKB/Swiss-Prot
    Q0P5J9
    Related
    ENSBTAP00000048688.1, ENSBTAT00000056481.3
    Conserved Domains (2) summary
    cd17011
    Location:4 → 131
    CID_RPRD1A; CID (CTD-Interacting Domain) of Regulation of nuclear pre-mRNA domain-containing protein 1A
    pfam16566
    Location:165 → 263
    CREPT; Cell-cycle alteration and expression-elevated protein in tumor

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037351.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    21051664..21120400
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010818676.4 → XP_010816978.1  regulation of nuclear pre-mRNA domain-containing protein 1A isoform X1

    See identical proteins and their annotated locations for XP_010816978.1

    UniProtKB/Swiss-Prot
    Q0P5J9
    Conserved Domains (2) summary
    cd17011
    Location:4 → 131
    CID_RPRD1A; CID (CTD-Interacting Domain) of Regulation of nuclear pre-mRNA domain-containing protein 1A
    pfam16566
    Location:165 → 310
    CREPT; Cell-cycle alteration and expression-elevated protein in tumor

  2. XM_005223957.5 → XP_005224014.1  regulation of nuclear pre-mRNA domain-containing protein 1A isoform X1

    See identical proteins and their annotated locations for XP_005224014.1

    UniProtKB/Swiss-Prot
    Q0P5J9
    Conserved Domains (2) summary
    cd17011
    Location:4 → 131
    CID_RPRD1A; CID (CTD-Interacting Domain) of Regulation of nuclear pre-mRNA domain-containing protein 1A
    pfam16566
    Location:165 → 310
    CREPT; Cell-cycle alteration and expression-elevated protein in tumor

  3. XM_005223959.5 → XP_005224016.1  regulation of nuclear pre-mRNA domain-containing protein 1A isoform X3

    Related
    ENSBTAP00000007226.5, ENSBTAT00000007226.6
    Conserved Domains (2) summary
    smart00582
    Location:8 → 129
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    pfam16566
    Location:165 → 263
    CREPT; Cell-cycle alteration and expression-elevated protein in tumour

  4. XM_005223958.5 → XP_005224015.1  regulation of nuclear pre-mRNA domain-containing protein 1A isoform X2

    See identical proteins and their annotated locations for XP_005224015.1

    UniProtKB/TrEMBL
    A0A3Q1LT62
    Related
    ENSBTAP00000088703.1, ENSBTAT00000112388.1
    Conserved Domains (2) summary
    cd17011
    Location:4 → 131
    CID_RPRD1A; CID (CTD-Interacting Domain) of Regulation of nuclear pre-mRNA domain-containing protein 1A
    pfam16566
    Location:165 → 263
    CREPT; Cell-cycle alteration and expression-elevated protein in tumor

RNA

  1. XR_009492657.1 RNA Sequence

    Related
    ENSBTAT00000113502.1

  2. XR_009492658.1 RNA Sequence

  3. XR_009492659.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0P5J9.2 GenPept UniProtKB/Swiss-Prot:Q0P5J9

Gene LinkOut

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