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LacZ Beta-galactosidase, putative [ Ostreococcus lucimarinus CCE9901 ]

Gene ID: 5000442, updated on 21-Dec-2023

Summary

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Gene symbol
LacZ
Gene description
Beta-galactosidase, putative
Locus tag
OSTLU_119488
Gene type
protein coding
RNA name
Beta-galactosidase, putative
RefSeq status
PROVISIONAL
Organism
Ostreococcus lucimarinus CCE9901 (strain: CCE9901)
Lineage
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Genomic context

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See LacZ in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_009356.1 (426181..429767, complement)

Chromosome 2 - NC_009356.1Genomic Context describing neighboring genes Neighboring gene Ribosomal protein S28e Neighboring gene NA excision repair protein ERCC-1-like protein Neighboring gene Protein Lysyl hydroxylase fusion protein, putative Neighboring gene ABC1 family protein-like protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009356.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Palenik B, et al. Proc Natl Acad Sci U S A, 2007 May 1. PMID 17460045, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lactose catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of beta-galactosidase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
Beta-galactosidase, putative
XP_001416385.1
  • similar to GenBank Accession Number BAD87855.1| putative beta-galactosidase [Oryza sativa] 707 0.0

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009356.1 Reference assembly

    Range
    426181..429767 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001416348.1 → XP_001416385.1  Beta-galactosidase, putative [Ostreococcus lucimarinus CCE9901]

    See identical proteins and their annotated locations for XP_001416385.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A4RT31
    Conserved Domains (6) summary
    PRK09525
    Location:72 → 1134
    lacZ; beta-D-galactosidase; Reviewed
    pfam00703
    Location:309 → 438
    Glyco_hydro_2; Glycosyl hydrolases family 2
    pfam02837
    Location:117 → 305
    Glyco_hydro_2_N; Glycosyl hydrolases family 2, sugar binding domain
    pfam02929
    Location:867 → 1136
    Bgal_small_N; Beta galactosidase small chain
    pfam16353
    Location:732 → 830
    DUF4981; Domain of unknown function(DUF4981)
    cl23725
    Location:440 → 725
    Glyco_hydro_1; Glycosyl hydrolase family 1
Nucleotide Protein
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