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prss27 serine protease 27 gene 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 496619, updated on 25-Apr-2024

Summary

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Official Symbol
prss27provided by Xenbase
Official Full Name
serine protease 27 gene 1provided by Xenbase
Primary source
Xenbase:XB-GENE-5744470
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
mpn; caph2; Xesp-1; tmprss9; marapsin; pancreasin
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Genomic context

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Location:
chromosome: 9
Exon count:
14
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (7639516..7669505)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (2798855..2812906)

Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene serine protease 27 gene 3 (provisional) Neighboring gene serine protease 27 Neighboring gene transmembrane protease serine 9-like Neighboring gene uncharacterized LOC116407684 Neighboring gene transmembrane protease serine 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables serine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within proteolysis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
serine protease 27 gene 1; uncharacterized protein prss27
Names
protease, serine 27
transmembrane serine protease 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    7639516..7669505
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031893375.1 → XP_031749235.1  uncharacterized protein prss27

    UniProtKB/TrEMBL
    A0A8J1IWT8
    Conserved Domains (1) summary
    cd00190
    Location:420 → 659
    Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001011195.1: Suppressed sequence

    Description
    NM_001011195.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from frog (X.tr): prss36 (GeneID:448231).
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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