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pus1.L pseudouridylate synthase 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 496371, updated on 11-Apr-2024

Summary

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Official Symbol
pus1.L
Official Full Name
pseudouridylate synthase 1 L homeolog
Primary source
Xenbase:XB-GENE-17339884
Locus tag
XELAEV_18007732mg
See related
EnsemblRapid:ENSXLAG00005013661
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
pus1
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See pus1.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (170103311..170108566)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (156898371..156903676)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene nucleolar complex associated 4 homolog L homeolog Neighboring gene E1A binding protein p400 L homeolog Neighboring gene E1A-binding protein p400 Neighboring gene small nucleolar RNA SNORA49 Neighboring gene small nucleolar RNA SNORA49

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables isomerase activity IEA
Inferred from Electronic Annotation
more info
  
enables pseudouridine synthase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within mRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within tRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
pseudouridylate synthase 1 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095519.1 → NP_001088988.1  pseudouridylate synthase 1 L homeolog

    See identical proteins and their annotated locations for NP_001088988.1

    Status: PROVISIONAL

    Source sequence(s)
    BC088978
    UniProtKB/TrEMBL
    Q5HZK6
    Related
    ENSXLAP00005040287.1, ENSXLAT00005041210.1
    Conserved Domains (1) summary
    cl00130
    Location:60 → 152
    PseudoU_synth; Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    170103311..170108566
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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