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bscl2.L Berardinelli-Seip congenital lipodystrophy 2 (seipin) L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 494686, updated on 17-Aug-2024

Summary

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Official Symbol
bscl2.L
Official Full Name
Berardinelli-Seip congenital lipodystrophy 2 (seipin) L homeolog
Primary source
Xenbase:XB-GENE-956632
Locus tag
XELAEV_18022197mg
See related
EnsemblRapid:ENSXLAG00005021413
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
bscl2; seipin
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Genomic context

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Location:
chromosome: 4L
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (25976140..25992790)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4L NC_030730.1 (24451399..24468633)

Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein U-like 2 L homeolog Neighboring gene uncharacterized LOC108713901 Neighboring gene guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-3 Neighboring gene LRRN4 C-terminal like L homeolog Neighboring gene LRRN4 C-terminal-like protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within lipid droplet formation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within lipid metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within lipid storage IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Berardinelli-Seip congenital lipodystrophy 2 (seipin) L homeolog; berardinelli-Seip congenital lipodystrophy 2 (seipin) L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094528.1 → NP_001087997.1  Berardinelli-Seip congenital lipodystrophy 2 (seipin) L homeolog

    See identical proteins and their annotated locations for NP_001087997.1

    Status: PROVISIONAL

    Source sequence(s)
    BC082677
    UniProtKB/TrEMBL
    Q640F1
    Related
    ENSXLAP00005062861.1, ENSXLAT00005064314.1
    Conserved Domains (1) summary
    pfam06775
    Location:34 → 227
    Seipin; Putative adipose-regulatory protein (Seipin)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    25976140..25992790
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041589372.1 → XP_041445306.1  berardinelli-Seip congenital lipodystrophy 2 (seipin) L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8GJQ5, A0A974D1Y1
    Conserved Domains (1) summary
    pfam06775
    Location:49 → 243
    Seipin; Putative adipose-regulatory protein (Seipin)

  2. XM_041589373.1 → XP_041445307.1  berardinelli-Seip congenital lipodystrophy 2 (seipin) L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8GJQ5, A0A974D1Y1
    Conserved Domains (1) summary
    pfam06775
    Location:49 → 243
    Seipin; Putative adipose-regulatory protein (Seipin)

  3. XM_018256850.2 → XP_018112339.1  berardinelli-Seip congenital lipodystrophy 2 (seipin) L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8GJQ5, A0A974D1Y1
    Conserved Domains (1) summary
    pfam06775
    Location:49 → 243
    Seipin; Putative adipose-regulatory protein (Seipin)
Nucleotide Protein Strain
Heading Accession and Version

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