U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC494423 solute carrier family 21-like [ Ciona intestinalis (vase tunicate) ]

Gene ID: 494423, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC494423
Gene description
solute carrier family 21-like
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC494423 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) Unplaced Scaffold NW_004190444.2 (128265..155387, complement)

NW_004190444.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100175330 Neighboring gene cell division cycle protein 123 homolog Neighboring gene putative transferase CAF17 homolog, mitochondrial Neighboring gene pantothenate kinase 3 Neighboring gene transcription factor IIIB 50 kDa subunit Neighboring gene GPI transamidase component PIG-S-like Neighboring gene uncharacterized LOC100176063 Neighboring gene uncharacterized LOC100178422 Neighboring gene DCN1-like protein 3

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_004190444 Unplaced Scaffold Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Identification and sequence of seventy-nine new transcripts expressed in hemocytes of Ciona intestinalis, three of which may be involved in characteristic cell-cell communication. Terajima D, et al. DNA Res, 2003 Oct 31. PMID 14686582

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sodium-independent organic anion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sodium-independent organic anion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
solute carrier family 21-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001245057.1 → NP_001231986.1  solute carrier family 21-like

    See identical proteins and their annotated locations for NP_001231986.1

    Status: PROVISIONAL

    Source sequence(s)
    AY261834
    UniProtKB/TrEMBL
    A0A1W2VXL7, F6X5N8, Q69HT1
    Conserved Domains (1) summary
    cd01330
    Location:80 → 135
    KAZAL_SLC21; The kazal-type serine protease inhibitor domain has been detected in an extracellular loop region of solute carrier 21 (SLC21) family members (organic anion transporters) , which may regulate the specificity of anion uptake. The KAZAL_SLC21 domain is a ...

RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NW_004190444.2 Reference KH Primary Assembly

    Range
    128265..155387 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026838853.1 → XP_026694654.1  solute carrier family 21-like isoform X1

  2. XM_026838854.1 → XP_026694655.1  solute carrier family 21-like isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases