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CACFD1 calcium channel flower domain containing 1 [ Canis lupus familiaris (dog) ]

Gene ID: 491273, updated on 17-Aug-2024

Summary

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Official Symbol
CACFD1provided by VGNC
Official Full Name
calcium channel flower domain containing 1provided by VGNC
Primary source
VGNC:VGNC:111386
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
C9H9orf7
Orthologs
human mouse all
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Genomic context

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See CACFD1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
5
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (50741637..50752154)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (49148870..49159388)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (49923585..49934115)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (49503703..49514206)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (49845445..49855955)

Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene serine/threonine kinase like domain containing 1 Neighboring gene REX4 homolog, 3'-5' exonuclease Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 13 Neighboring gene solute carrier family 2 member 6 Neighboring gene myomaker, myoblast fusion factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium channel flower homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051813.1 Reference ROS_Cfam_1.0

    Range
    50741637..50752154
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038678098.1 → XP_038534026.1  calcium channel flower homolog

    UniProtKB/TrEMBL
    A0A8C0Q170
    Conserved Domains (1) summary
    smart01077
    Location:35 → 143
    Cg6151-P; Uncharacterized conserved protein CG6151-P

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049269.1 Alternate UMICH_Zoey_3.1

    Range
    49503703..49514206
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038486989.1 → XP_038342917.1  calcium channel flower homolog

    Conserved Domains (1) summary
    smart01077
    Location:35 → 143
    Cg6151-P; Uncharacterized conserved protein CG6151-P

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

    Range
    49845445..49855955
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038612800.1 → XP_038468728.1  calcium channel flower homolog

    Conserved Domains (1) summary
    smart01077
    Location:35 → 143
    Cg6151-P; Uncharacterized conserved protein CG6151-P

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

    Range
    49923585..49934115
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038548850.1 → XP_038404778.1  calcium channel flower homolog

    UniProtKB/TrEMBL
    A0A8C0Q170
    Conserved Domains (1) summary
    smart01077
    Location:35 → 143
    Cg6151-P; Uncharacterized conserved protein CG6151-P

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    49148870..49159388
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038615495.1 → XP_038471423.1  calcium channel flower homolog

    UniProtKB/TrEMBL
    A0A8C0QT54
    Conserved Domains (1) summary
    smart01077
    Location:35 → 143
    Cg6151-P; Uncharacterized conserved protein CG6151-P
Nucleotide Protein
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