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ABCD4 ATP binding cassette subfamily D member 4 [ Canis lupus familiaris (dog) ]

Gene ID: 490781, updated on 11-Apr-2024

Summary

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Official Symbol
ABCD4provided by VGNC
Official Full Name
ATP binding cassette subfamily D member 4provided by VGNC
Primary source
VGNC:VGNC:37448
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See ABCD4 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
19
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 8 NC_051812.1 (47715766..47732070, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 8 NC_006590.4 (47173373..47191986, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 8 NC_049229.1 (47793455..47812081, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 8 NC_049268.1 (47384860..47403479, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 8 NC_049749.1 (47406500..47425091, complement)

Chromosome 8 - NC_051812.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119873002 Neighboring gene visual system homeobox 2 Neighboring gene vertebrae development associated Neighboring gene synapse differentiation inducing 1 like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables long-chain fatty acid transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid beta-oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in long-chain fatty acid import into peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peroxisome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in very long-chain fatty acid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-binding cassette sub-family D member 4; LOW QUALITY PROTEIN: lysosomal cobalamin transporter ABCD4; lysosomal cobalamin transporter ABCD4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051812.1 Reference ROS_Cfam_1.0

    Range
    47715766..47732070 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038674184.1 → XP_038530112.1  LOW QUALITY PROTEIN: lysosomal cobalamin transporter ABCD4 isoform X1

    UniProtKB/TrEMBL
    A0A8I3S4Z0
    Conserved Domains (2) summary
    TIGR00954
    Location:16 → 605
    3a01203; Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein
    pfam06472
    Location:27 → 294
    ABC_membrane_2; ABC transporter transmembrane region 2

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049268.1 Alternate UMICH_Zoey_3.1

    Range
    47384860..47403479 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038483782.1 → XP_038339710.1  lysosomal cobalamin transporter ABCD4 isoform X3

  2. XM_038483781.1 → XP_038339709.1  lysosomal cobalamin transporter ABCD4 isoform X2

  3. XM_038483783.1 → XP_038339711.1  lysosomal cobalamin transporter ABCD4 isoform X4

    Conserved Domains (2) summary
    cd03223
    Location:124 → 335
    ABCD_peroxisomal_ALDP; ATP-binding cassette domain of peroxisomal transporter, subfamily D
    TIGR02868
    Location:19 → 299
    CydC; thiol reductant ABC exporter, CydC subunit

  4. XM_038483784.1 → XP_038339712.1  lysosomal cobalamin transporter ABCD4 isoform X5

RNA

  1. XR_005329671.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049749.1 Alternate UNSW_CanFamBas_1.0

    Range
    47406500..47425091 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038609358.1 → XP_038465286.1  lysosomal cobalamin transporter ABCD4 isoform X7

  2. XM_038609357.1 → XP_038465285.1  lysosomal cobalamin transporter ABCD4 isoform X6

  3. XM_038609359.1 → XP_038465287.1  lysosomal cobalamin transporter ABCD4 isoform X8

    Conserved Domains (2) summary
    cd03223
    Location:124 → 335
    ABCD_peroxisomal_ALDP; ATP-binding cassette domain of peroxisomal transporter, subfamily D
    TIGR02868
    Location:19 → 299
    CydC; thiol reductant ABC exporter, CydC subunit

  4. XM_038609360.1 → XP_038465288.1  lysosomal cobalamin transporter ABCD4 isoform X9

RNA

  1. XR_005397982.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049229.1 Alternate UU_Cfam_GSD_1.0

    Range
    47793455..47812081 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038545262.1 → XP_038401190.1  lysosomal cobalamin transporter ABCD4 isoform X11

    UniProtKB/TrEMBL
    A0A8I3S4Z0

  2. XM_038545261.1 → XP_038401189.1  lysosomal cobalamin transporter ABCD4 isoform X10

    UniProtKB/TrEMBL
    A0A8C0S8X6, A0A8I3S4Z0, A0A8P0NIE2

  3. XM_038545263.1 → XP_038401191.1  lysosomal cobalamin transporter ABCD4 isoform X12

    Conserved Domains (2) summary
    cd03223
    Location:124 → 335
    ABCD_peroxisomal_ALDP; ATP-binding cassette domain of peroxisomal transporter, subfamily D
    TIGR02868
    Location:19 → 299
    CydC; thiol reductant ABC exporter, CydC subunit

  4. XM_038545264.1 → XP_038401192.1  lysosomal cobalamin transporter ABCD4 isoform X13

RNA

  1. XR_005363527.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006590.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    47173373..47191986 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005623658.4 → XP_005623715.1  lysosomal cobalamin transporter ABCD4 isoform X15

    UniProtKB/TrEMBL
    A0A8I3S4Z0
    Conserved Domains (1) summary
    COG4178
    Location:1 → 560
    YddA; ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

  2. XM_547903.7 → XP_547903.2  lysosomal cobalamin transporter ABCD4 isoform X14

    UniProtKB/TrEMBL
    A0A8C0S8X6, A0A8I3S4Z0, A0A8P0NIE2
    Conserved Domains (2) summary
    pfam06472
    Location:16 → 294
    ABC_membrane_2; ABC transporter transmembrane region 2
    cl26602
    Location:16 → 600
    SunT; ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

  3. XM_022422213.1 → XP_022277921.1  lysosomal cobalamin transporter ABCD4 isoform X16

    Conserved Domains (2) summary
    cd03223
    Location:124 → 335
    ABCD_peroxisomal_ALDP; ATP-binding cassette domain of peroxisomal transporter, subfamily D
    TIGR02868
    Location:19 → 299
    CydC; thiol reductant ABC exporter, CydC subunit

  4. XM_022422214.2 → XP_022277922.1  lysosomal cobalamin transporter ABCD4 isoform X17

    Conserved Domains (1) summary
    cl26602
    Location:31 → 442
    SunT; ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

RNA

  1. XR_292979.4 RNA Sequence

Nucleotide Protein
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