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GMDS GDP-mannose 4,6-dehydratase [ Canis lupus familiaris (dog) ]

Gene ID: 488189, updated on 17-Aug-2024

Summary

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Official Symbol
GMDSprovided by VGNC
Official Full Name
GDP-mannose 4,6-dehydrataseprovided by VGNC
Primary source
VGNC:VGNC:58303
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See GMDS in Genome Data Viewer
Location:
chromosome: 35
Exon count:
11
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 35 NC_051839.1 (2025524..2554965, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 35 NC_006617.4 (2079228..2654331, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 35 NC_049256.1 (3357422..3932361, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 35 NC_049295.1 (2000500..2575207, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 35 NC_049776.1 (2021716..2596616, complement)

Chromosome 35 - NC_051839.1Genomic Context describing neighboring genes Neighboring gene glutathione peroxidase 8 (putative) pseudogene Neighboring gene forkhead box C1 Neighboring gene translation initiation factor IF-2-like Neighboring gene uncharacterized LOC111094015 Neighboring gene uncharacterized LOC102157309 Neighboring gene 60S ribosomal protein L36a-like Neighboring gene uncharacterized LOC102151223 Neighboring gene uncharacterized LOC119867599

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GDP-mannose 4,6-dehydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GDP-mannose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GDP-mannose 4,6 dehydratase
XP_038302143.1
XP_038319112.1
XP_038319113.1
XP_038376317.1
XP_038376318.1
XP_038439938.1
XP_038439939.1
XP_038504354.1
XP_038504355.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051839.1 Reference ROS_Cfam_1.0

    Range
    2025524..2554965 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038446215.1 → XP_038302143.1  GDP-mannose 4,6 dehydratase isoform X1

    UniProtKB/TrEMBL
    A0A8P0TIC9
    Conserved Domains (1) summary
    TIGR01472
    Location:13 → 345
    gmd; GDP-mannose 4,6-dehydratase

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049295.1 Alternate UMICH_Zoey_3.1

    Range
    2000500..2575207 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038520389.1 → XP_038376317.1  GDP-mannose 4,6 dehydratase isoform X2

    Conserved Domains (1) summary
    TIGR01472
    Location:20 → 362
    gmd; GDP-mannose 4,6-dehydratase

  2. XM_038520390.1 → XP_038376318.1  GDP-mannose 4,6 dehydratase isoform X1

    Conserved Domains (1) summary
    TIGR01472
    Location:13 → 345
    gmd; GDP-mannose 4,6-dehydratase

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049776.1 Alternate UNSW_CanFamBas_1.0

    Range
    2021716..2596616 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038648426.1 → XP_038504354.1  GDP-mannose 4,6 dehydratase isoform X3

    Conserved Domains (1) summary
    TIGR01472
    Location:20 → 362
    gmd; GDP-mannose 4,6-dehydratase

  2. XM_038648427.1 → XP_038504355.1  GDP-mannose 4,6 dehydratase isoform X1

    Conserved Domains (1) summary
    TIGR01472
    Location:13 → 345
    gmd; GDP-mannose 4,6-dehydratase

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049256.1 Alternate UU_Cfam_GSD_1.0

    Range
    3357422..3932361 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038584010.1 → XP_038439938.1  GDP-mannose 4,6 dehydratase isoform X4

    UniProtKB/TrEMBL
    A0A8C0JGJ7, A0A8C0MP63, A0A8P0SEA7, A0A8P0TIC9
    Conserved Domains (1) summary
    TIGR01472
    Location:20 → 362
    gmd; GDP-mannose 4,6-dehydratase

  2. XM_038584011.1 → XP_038439939.1  GDP-mannose 4,6 dehydratase isoform X1

    UniProtKB/TrEMBL
    A0A8P0TIC9
    Conserved Domains (1) summary
    TIGR01472
    Location:13 → 345
    gmd; GDP-mannose 4,6-dehydratase

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006617.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    2079228..2654331 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038463184.1 → XP_038319112.1  GDP-mannose 4,6 dehydratase isoform X5

    UniProtKB/TrEMBL
    A0A8C0JGJ7, A0A8C0MP63, A0A8P0SEA7, A0A8P0TIC9
    Conserved Domains (1) summary
    TIGR01472
    Location:20 → 362
    gmd; GDP-mannose 4,6-dehydratase

  2. XM_038463185.1 → XP_038319113.1  GDP-mannose 4,6 dehydratase isoform X1

    UniProtKB/TrEMBL
    A0A8P0TIC9
    Conserved Domains (1) summary
    TIGR01472
    Location:13 → 345
    gmd; GDP-mannose 4,6-dehydratase
Nucleotide Protein
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