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BORCS5 BLOC-1 related complex subunit 5 [ Canis lupus familiaris (dog) ]

Gene ID: 486684, updated on 5-Mar-2024

Summary

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Official Symbol
BORCS5provided by VGNC
Official Full Name
BLOC-1 related complex subunit 5provided by VGNC
Primary source
VGNC:VGNC:38500
See related
Ensembl:ENSCAFG00845024109
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
LOH12CR1
Orthologs
human mouse all
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Genomic context

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See BORCS5 in Genome Data Viewer
Location:
chromosome: 27
Exon count:
11
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 27 NC_051831.1 (34146425..34256421, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 27 NC_006609.4 (12496789..12606369)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 27 NC_049248.1 (12228438..12340603)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 27 NC_049287.1 (34039090..34148751, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 27 NC_049768.1 (33988879..34098859, complement)

Chromosome 27 - NC_051831.1Genomic Context describing neighboring genes Neighboring gene cAMP responsive element binding protein like 2 Neighboring gene dual specificity phosphatase 16 Neighboring gene MANSC domain containing 1 Neighboring gene uncharacterized LOC111092851 Neighboring gene uncharacterized LOC111092852 Neighboring gene LDL receptor related protein 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in lysosome localization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in organelle transport along microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of anterograde synaptic vesicle transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of BORC complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasmic side of lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BLOC-1-related complex subunit 5
Names
loss of heterozygosity, 12, chromosomal region 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051831.1 Reference ROS_Cfam_1.0

    Range
    34146425..34256421 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038438983.1 → XP_038294911.1  BLOC-1-related complex subunit 5 isoform X3

    Conserved Domains (1) summary
    pfam10158
    Location:31 → 193
    LOH1CR12; tumor suppressor protein

  2. XM_038438982.1 → XP_038294910.1  BLOC-1-related complex subunit 5 isoform X2

    UniProtKB/TrEMBL
    A0A8C0JYC7, A0A8C0RM72, A0A8I3PVJ5
    Conserved Domains (1) summary
    pfam10158
    Location:42 → 204
    LOH1CR12; tumor suppressor protein

  3. XM_038438981.1 → XP_038294909.1  BLOC-1-related complex subunit 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0JYC7, A0A8C0K046, A0A8C0RM72, A0A8I3PVJ5
    Conserved Domains (1) summary
    pfam10158
    Location:61 → 223
    LOH1CR12; tumor suppressor protein

  4. XM_038438986.1 → XP_038294914.1  BLOC-1-related complex subunit 5 isoform X4

    UniProtKB/TrEMBL
    A0A8C0JYC7, A0A8C0K102, A0A8C0RM72, A0A8C0TL03, A0A8I3PGM7, A0A8I3PVJ5
    Related
    ENSCAFP00845033411.1, ENSCAFT00845042614.1
    Conserved Domains (1) summary
    pfam10158
    Location:61 → 191
    LOH1CR12; tumor suppressor protein

  5. XM_038438984.1 → XP_038294912.1  BLOC-1-related complex subunit 5 isoform X3

    Conserved Domains (1) summary
    pfam10158
    Location:31 → 193
    LOH1CR12; tumor suppressor protein

  6. XM_038438985.1 → XP_038294913.1  BLOC-1-related complex subunit 5 isoform X3

    Conserved Domains (1) summary
    pfam10158
    Location:31 → 193
    LOH1CR12; tumor suppressor protein

  7. XM_038438987.1 → XP_038294915.1  BLOC-1-related complex subunit 5 isoform X5

    Conserved Domains (1) summary
    pfam10158
    Location:61 → 120
    LOH1CR12; tumor suppressor protein

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049287.1 Alternate UMICH_Zoey_3.1

    Range
    34039090..34148751 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038513646.1 → XP_038369574.1  BLOC-1-related complex subunit 5 isoform X3

    Conserved Domains (1) summary
    pfam10158
    Location:31 → 193
    LOH1CR12; tumor suppressor protein

  2. XM_038513645.1 → XP_038369573.1  BLOC-1-related complex subunit 5 isoform X2

    Conserved Domains (1) summary
    pfam10158
    Location:42 → 204
    LOH1CR12; tumor suppressor protein

  3. XM_038513644.1 → XP_038369572.1  BLOC-1-related complex subunit 5 isoform X1

    Conserved Domains (1) summary
    pfam10158
    Location:61 → 223
    LOH1CR12; tumor suppressor protein

  4. XM_038513649.1 → XP_038369577.1  BLOC-1-related complex subunit 5 isoform X4

    Conserved Domains (1) summary
    pfam10158
    Location:61 → 191
    LOH1CR12; tumor suppressor protein

  5. XM_038513647.1 → XP_038369575.1  BLOC-1-related complex subunit 5 isoform X3

    Conserved Domains (1) summary
    pfam10158
    Location:31 → 193
    LOH1CR12; tumor suppressor protein

  6. XM_038513648.1 → XP_038369576.1  BLOC-1-related complex subunit 5 isoform X3

    Conserved Domains (1) summary
    pfam10158
    Location:31 → 193
    LOH1CR12; tumor suppressor protein

  7. XM_038513650.1 → XP_038369578.1  BLOC-1-related complex subunit 5 isoform X5

    Conserved Domains (1) summary
    pfam10158
    Location:61 → 120
    LOH1CR12; tumor suppressor protein

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049768.1 Alternate UNSW_CanFamBas_1.0

    Range
    33988879..34098859 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038641462.1 → XP_038497390.1  BLOC-1-related complex subunit 5 isoform X3

    Conserved Domains (1) summary
    pfam10158
    Location:31 → 193
    LOH1CR12; tumor suppressor protein

  2. XM_038641461.1 → XP_038497389.1  BLOC-1-related complex subunit 5 isoform X2

    Conserved Domains (1) summary
    pfam10158
    Location:42 → 204
    LOH1CR12; tumor suppressor protein

  3. XM_038641460.1 → XP_038497388.1  BLOC-1-related complex subunit 5 isoform X1

    Conserved Domains (1) summary
    pfam10158
    Location:61 → 223
    LOH1CR12; tumor suppressor protein

  4. XM_038641465.1 → XP_038497393.1  BLOC-1-related complex subunit 5 isoform X4

    Conserved Domains (1) summary
    pfam10158
    Location:61 → 191
    LOH1CR12; tumor suppressor protein

  5. XM_038641463.1 → XP_038497391.1  BLOC-1-related complex subunit 5 isoform X3

    Conserved Domains (1) summary
    pfam10158
    Location:31 → 193
    LOH1CR12; tumor suppressor protein

  6. XM_038641464.1 → XP_038497392.1  BLOC-1-related complex subunit 5 isoform X3

    Conserved Domains (1) summary
    pfam10158
    Location:31 → 193
    LOH1CR12; tumor suppressor protein

  7. XM_038641466.1 → XP_038497394.1  BLOC-1-related complex subunit 5 isoform X5

    Conserved Domains (1) summary
    pfam10158
    Location:61 → 120
    LOH1CR12; tumor suppressor protein

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049248.1 Alternate UU_Cfam_GSD_1.0

    Range
    12228438..12340603
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038576819.1 → XP_038432747.1  BLOC-1-related complex subunit 5 isoform X3

    Conserved Domains (1) summary
    pfam10158
    Location:31 → 193
    LOH1CR12; tumor suppressor protein

  2. XM_038576818.1 → XP_038432746.1  BLOC-1-related complex subunit 5 isoform X2

    UniProtKB/TrEMBL
    A0A8C0JYC7, A0A8C0RM72, A0A8I3PVJ5
    Conserved Domains (1) summary
    pfam10158
    Location:42 → 204
    LOH1CR12; tumor suppressor protein

  3. XM_038576823.1 → XP_038432751.1  BLOC-1-related complex subunit 5 isoform X5

    Conserved Domains (1) summary
    pfam10158
    Location:61 → 120
    LOH1CR12; tumor suppressor protein

  4. XM_038576817.1 → XP_038432745.1  BLOC-1-related complex subunit 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0JYC7, A0A8C0K046, A0A8C0RM72, A0A8I3PVJ5
    Conserved Domains (1) summary
    pfam10158
    Location:61 → 223
    LOH1CR12; tumor suppressor protein

  5. XM_038576822.1 → XP_038432750.1  BLOC-1-related complex subunit 5 isoform X4

    UniProtKB/TrEMBL
    A0A8C0JYC7, A0A8C0K102, A0A8C0RM72, A0A8C0TL03, A0A8I3PGM7, A0A8I3PVJ5
    Conserved Domains (1) summary
    pfam10158
    Location:61 → 191
    LOH1CR12; tumor suppressor protein

  6. XM_038576820.1 → XP_038432748.1  BLOC-1-related complex subunit 5 isoform X3

    Conserved Domains (1) summary
    pfam10158
    Location:31 → 193
    LOH1CR12; tumor suppressor protein

  7. XM_038576821.1 → XP_038432749.1  BLOC-1-related complex subunit 5 isoform X3

    Conserved Domains (1) summary
    pfam10158
    Location:31 → 193
    LOH1CR12; tumor suppressor protein

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006609.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    12496789..12606369
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022411411.2 → XP_022267119.1  BLOC-1-related complex subunit 5 isoform X3

    Conserved Domains (1) summary
    pfam10158
    Location:31 → 193
    LOH1CR12; tumor suppressor protein

  2. XM_005637136.3 → XP_005637193.1  BLOC-1-related complex subunit 5 isoform X2

    UniProtKB/TrEMBL
    A0A8C0JYC7, A0A8C0RM72, A0A8I3PVJ5
    Conserved Domains (1) summary
    pfam10158
    Location:42 → 204
    LOH1CR12; tumor suppressor protein

  3. XM_005637137.4 → XP_005637194.1  BLOC-1-related complex subunit 5 isoform X5

    Conserved Domains (1) summary
    pfam10158
    Location:61 → 120
    LOH1CR12; tumor suppressor protein

  4. XM_005637135.4 → XP_005637192.1  BLOC-1-related complex subunit 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0JYC7, A0A8C0K046, A0A8C0RM72, A0A8I3PVJ5
    Conserved Domains (1) summary
    pfam10158
    Location:61 → 223
    LOH1CR12; tumor suppressor protein

  5. XM_543811.7 → XP_543811.2  BLOC-1-related complex subunit 5 isoform X4

    UniProtKB/TrEMBL
    A0A8C0JYC7, A0A8C0K102, A0A8C0RM72, A0A8C0TL03, A0A8I3PGM7, A0A8I3PVJ5
    Conserved Domains (1) summary
    pfam10158
    Location:61 → 191
    LOH1CR12; tumor suppressor protein

  6. XM_014108612.3 → XP_013964087.1  BLOC-1-related complex subunit 5 isoform X3

    Conserved Domains (1) summary
    pfam10158
    Location:31 → 193
    LOH1CR12; tumor suppressor protein

  7. XM_014108613.3 → XP_013964088.1  BLOC-1-related complex subunit 5 isoform X3

    Conserved Domains (1) summary
    pfam10158
    Location:31 → 193
    LOH1CR12; tumor suppressor protein
Nucleotide Protein
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