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SATB1 SATB homeobox 1 [ Canis lupus familiaris (dog) ]

Gene ID: 485650, updated on 5-Mar-2024

Summary

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Official Symbol
SATB1provided by VGNC
Official Full Name
SATB homeobox 1provided by VGNC
Primary source
VGNC:VGNC:45875
See related
Ensembl:ENSCAFG00845021681
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See SATB1 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
15
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 23 NC_051827.1 (25080231..25182042)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 23 NC_006605.4 (24628318..24729971)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 23 NC_049244.1 (25107820..25209575)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 23 NC_049283.1 (24802248..24903924)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 23 NC_049764.1 (24862371..24964041)

Chromosome 23 - NC_051827.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119865374 Neighboring gene U4 spliceosomal RNA Neighboring gene uncharacterized LOC102152799 Neighboring gene uncharacterized LOC119865375 Neighboring gene uncharacterized LOC119865307 Neighboring gene uncharacterized LOC111091969

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-binding protein SATB1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051827.1 Reference ROS_Cfam_1.0

    Range
    25080231..25182042
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038432197.1 → XP_038288125.1  DNA-binding protein SATB1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LU83, A0A8C0PI36, A0A8I3PGJ0
    Conserved Domains (4) summary
    smart00389
    Location:673 → 730
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  2. XM_038432199.1 → XP_038288127.1  DNA-binding protein SATB1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LU83, A0A8C0PI36, A0A8I3PGJ0
    Conserved Domains (4) summary
    smart00389
    Location:673 → 730
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  3. XM_038432198.1 → XP_038288126.1  DNA-binding protein SATB1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LU83, A0A8C0PI36, A0A8I3PGJ0
    Conserved Domains (4) summary
    smart00389
    Location:673 → 730
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  4. XM_038432196.1 → XP_038288124.1  DNA-binding protein SATB1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LU83, A0A8C0PI36, A0A8I3PGJ0
    Related
    ENSCAFP00845030107.1, ENSCAFT00845038454.1
    Conserved Domains (4) summary
    smart00389
    Location:673 → 730
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  5. XM_038432200.1 → XP_038288128.1  DNA-binding protein SATB1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0LP41, A0A8C0TL17, A0A8I3PHS4
    Related
    ENSCAFP00845030042.1, ENSCAFT00845038370.1
    Conserved Domains (4) summary
    smart00389
    Location:641 → 698
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  6. XM_038432201.1 → XP_038288129.1  DNA-binding protein SATB1 isoform X3

    Conserved Domains (4) summary
    smart00389
    Location:640 → 697
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  7. XM_038432195.1 → XP_038288123.1  DNA-binding protein SATB1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LU83, A0A8C0PI36, A0A8I3PGJ0
    Conserved Domains (4) summary
    smart00389
    Location:673 → 730
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049283.1 Alternate UMICH_Zoey_3.1

    Range
    24802248..24903924
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038507499.1 → XP_038363427.1  DNA-binding protein SATB1 isoform X1

    Conserved Domains (4) summary
    smart00389
    Location:673 → 730
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  2. XM_038507501.1 → XP_038363429.1  DNA-binding protein SATB1 isoform X1

    Conserved Domains (4) summary
    smart00389
    Location:673 → 730
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  3. XM_038507500.1 → XP_038363428.1  DNA-binding protein SATB1 isoform X1

    Conserved Domains (4) summary
    smart00389
    Location:673 → 730
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  4. XM_038507497.1 → XP_038363425.1  DNA-binding protein SATB1 isoform X1

    Conserved Domains (4) summary
    smart00389
    Location:673 → 730
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  5. XM_038507498.1 → XP_038363426.1  DNA-binding protein SATB1 isoform X1

    Conserved Domains (4) summary
    smart00389
    Location:673 → 730
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  6. XM_038507502.1 → XP_038363430.1  DNA-binding protein SATB1 isoform X2

    Conserved Domains (4) summary
    smart00389
    Location:641 → 698
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  7. XM_038507503.1 → XP_038363431.1  DNA-binding protein SATB1 isoform X3

    Conserved Domains (4) summary
    smart00389
    Location:640 → 697
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049764.1 Alternate UNSW_CanFamBas_1.0

    Range
    24862371..24964041
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038634927.1 → XP_038490855.1  DNA-binding protein SATB1 isoform X1

    Conserved Domains (4) summary
    smart00389
    Location:673 → 730
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  2. XM_038634929.1 → XP_038490857.1  DNA-binding protein SATB1 isoform X1

    Conserved Domains (4) summary
    smart00389
    Location:673 → 730
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  3. XM_038634928.1 → XP_038490856.1  DNA-binding protein SATB1 isoform X1

    Conserved Domains (4) summary
    smart00389
    Location:673 → 730
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  4. XM_038634925.1 → XP_038490853.1  DNA-binding protein SATB1 isoform X1

    Conserved Domains (4) summary
    smart00389
    Location:673 → 730
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  5. XM_038634926.1 → XP_038490854.1  DNA-binding protein SATB1 isoform X1

    Conserved Domains (4) summary
    smart00389
    Location:673 → 730
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  6. XM_038634930.1 → XP_038490858.1  DNA-binding protein SATB1 isoform X2

    Conserved Domains (4) summary
    smart00389
    Location:641 → 698
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  7. XM_038634931.1 → XP_038490859.1  DNA-binding protein SATB1 isoform X3

    Conserved Domains (4) summary
    smart00389
    Location:640 → 697
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049244.1 Alternate UU_Cfam_GSD_1.0

    Range
    25107820..25209575
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038570741.1 → XP_038426669.1  DNA-binding protein SATB1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LU83, A0A8C0PI36, A0A8I3PGJ0
    Conserved Domains (4) summary
    smart00389
    Location:673 → 730
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  2. XM_038570743.1 → XP_038426671.1  DNA-binding protein SATB1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LU83, A0A8C0PI36, A0A8I3PGJ0
    Conserved Domains (4) summary
    smart00389
    Location:673 → 730
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  3. XM_038570742.1 → XP_038426670.1  DNA-binding protein SATB1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LU83, A0A8C0PI36, A0A8I3PGJ0
    Conserved Domains (4) summary
    smart00389
    Location:673 → 730
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  4. XM_038570740.1 → XP_038426668.1  DNA-binding protein SATB1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LU83, A0A8C0PI36, A0A8I3PGJ0
    Conserved Domains (4) summary
    smart00389
    Location:673 → 730
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  5. XM_038570744.1 → XP_038426672.1  DNA-binding protein SATB1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0LP41, A0A8C0TL17, A0A8I3PHS4
    Conserved Domains (4) summary
    smart00389
    Location:641 → 698
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  6. XM_038570745.1 → XP_038426673.1  DNA-binding protein SATB1 isoform X3

    Conserved Domains (4) summary
    smart00389
    Location:640 → 697
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  7. XM_038570739.1 → XP_038426667.1  DNA-binding protein SATB1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LU83, A0A8C0PI36, A0A8I3PGJ0
    Conserved Domains (4) summary
    smart00389
    Location:673 → 730
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006605.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    24628318..24729971
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038457050.1 → XP_038312978.1  DNA-binding protein SATB1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LU83, A0A8C0PI36, A0A8I3PGJ0
    Conserved Domains (4) summary
    smart00389
    Location:673 → 730
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  2. XM_038457052.1 → XP_038312980.1  DNA-binding protein SATB1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LU83, A0A8C0PI36, A0A8I3PGJ0
    Conserved Domains (4) summary
    smart00389
    Location:673 → 730
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  3. XM_038457051.1 → XP_038312979.1  DNA-binding protein SATB1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LU83, A0A8C0PI36, A0A8I3PGJ0
    Conserved Domains (4) summary
    smart00389
    Location:673 → 730
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  4. XM_038457049.1 → XP_038312977.1  DNA-binding protein SATB1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LU83, A0A8C0PI36, A0A8I3PGJ0
    Conserved Domains (4) summary
    smart00389
    Location:673 → 730
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  5. XM_038457048.1 → XP_038312976.1  DNA-binding protein SATB1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LU83, A0A8C0PI36, A0A8I3PGJ0
    Conserved Domains (4) summary
    smart00389
    Location:673 → 730
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  6. XM_038457054.1 → XP_038312982.1  DNA-binding protein SATB1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0LP41, A0A8C0TL17, A0A8I3PHS4
    Conserved Domains (4) summary
    smart00389
    Location:641 → 698
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  7. XM_038457055.1 → XP_038312983.1  DNA-binding protein SATB1 isoform X3

    Conserved Domains (4) summary
    smart00389
    Location:640 → 697
    HOX; Homeodomain
    pfam02376
    Location:497 → 567
    CUT; CUT domain
    pfam16534
    Location:72 → 170
    ULD; Ubiquitin-like oligomerization domain of SATB
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB
Nucleotide Protein
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