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ELL elongation factor for RNA polymerase II [ Canis lupus familiaris (dog) ]

Gene ID: 484820, updated on 17-Aug-2024

Summary

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Official Symbol
ELLprovided by VGNC
Official Full Name
elongation factor for RNA polymerase IIprovided by VGNC
Primary source
VGNC:VGNC:40306
See related
Ensembl:ENSCAFG00845021270
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 20
Exon count:
13
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 20 NC_051824.1 (44998786..45078146)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 20 NC_006602.4 (44427274..44506570)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 20 NC_049241.1 (44921745..45001009)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 20 NC_049280.1 (44236144..44315451)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 20 NC_049761.1 (44646294..44725583)

Chromosome 20 - NC_051824.1Genomic Context describing neighboring genes Neighboring gene KxDL motif containing 1 Neighboring gene FKBP prolyl isomerase 8 Neighboring gene uncharacterized LOC102153688 Neighboring gene uncharacterized LOC119864712 Neighboring gene inositol-3-phosphate synthase 1 Neighboring gene single stranded DNA binding protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in snRNA transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription elongation factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA polymerase II elongation factor ELL

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051824.1 Reference ROS_Cfam_1.0

    Range
    44998786..45078146
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038428138.1 → XP_038284066.1  RNA polymerase II elongation factor ELL isoform X2

    UniProtKB/TrEMBL
    A0A8C0TN50, A0A8I3S513
    Conserved Domains (3) summary
    PHA03247
    Location:265 → 481
    PHA03247; large tegument protein UL36; Provisional
    pfam07303
    Location:469 → 570
    Occludin_ELL; Occludin homology domain
    pfam10390
    Location:7 → 256
    ELL; RNA polymerase II elongation factor ELL

  2. XM_038428137.1 → XP_038284065.1  RNA polymerase II elongation factor ELL isoform X1

    UniProtKB/TrEMBL
    A0A8C0KGP7, A0A8C0TN50, A0A8I3S513
    Related
    ENSCAFP00845029736.1, ENSCAFT00845037945.1
    Conserved Domains (3) summary
    PHA03247
    Location:301 → 517
    PHA03247; large tegument protein UL36; Provisional
    pfam07303
    Location:505 → 606
    Occludin_ELL; Occludin homology domain
    pfam10390
    Location:6 → 292
    ELL; RNA polymerase II elongation factor ELL

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049280.1 Alternate UMICH_Zoey_3.1

    Range
    44236144..44315451
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038503795.1 → XP_038359723.1  RNA polymerase II elongation factor ELL isoform X2

    Conserved Domains (3) summary
    PHA03247
    Location:265 → 481
    PHA03247; large tegument protein UL36; Provisional
    pfam07303
    Location:469 → 570
    Occludin_ELL; Occludin homology domain
    pfam10390
    Location:7 → 256
    ELL; RNA polymerase II elongation factor ELL

  2. XM_038503794.1 → XP_038359722.1  RNA polymerase II elongation factor ELL isoform X1

    Conserved Domains (3) summary
    PHA03247
    Location:301 → 517
    PHA03247; large tegument protein UL36; Provisional
    pfam07303
    Location:505 → 606
    Occludin_ELL; Occludin homology domain
    pfam10390
    Location:6 → 292
    ELL; RNA polymerase II elongation factor ELL

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049761.1 Alternate UNSW_CanFamBas_1.0

    Range
    44646294..44725583
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038630961.1 → XP_038486889.1  RNA polymerase II elongation factor ELL isoform X2

    Conserved Domains (3) summary
    PHA03247
    Location:265 → 481
    PHA03247; large tegument protein UL36; Provisional
    pfam07303
    Location:469 → 570
    Occludin_ELL; Occludin homology domain
    pfam10390
    Location:7 → 256
    ELL; RNA polymerase II elongation factor ELL

  2. XM_038630960.1 → XP_038486888.1  RNA polymerase II elongation factor ELL isoform X1

    Conserved Domains (3) summary
    PHA03247
    Location:301 → 517
    PHA03247; large tegument protein UL36; Provisional
    pfam07303
    Location:505 → 606
    Occludin_ELL; Occludin homology domain
    pfam10390
    Location:6 → 292
    ELL; RNA polymerase II elongation factor ELL

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049241.1 Alternate UU_Cfam_GSD_1.0

    Range
    44921745..45001009
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038566807.1 → XP_038422735.1  RNA polymerase II elongation factor ELL isoform X2

    UniProtKB/TrEMBL
    A0A8C0TN50, A0A8I3S513
    Conserved Domains (3) summary
    PHA03247
    Location:265 → 481
    PHA03247; large tegument protein UL36; Provisional
    pfam07303
    Location:469 → 570
    Occludin_ELL; Occludin homology domain
    pfam10390
    Location:7 → 256
    ELL; RNA polymerase II elongation factor ELL

  2. XM_038566806.1 → XP_038422734.1  RNA polymerase II elongation factor ELL isoform X1

    UniProtKB/TrEMBL
    A0A8C0KGP7, A0A8C0TN50, A0A8I3S513
    Conserved Domains (3) summary
    PHA03247
    Location:301 → 517
    PHA03247; large tegument protein UL36; Provisional
    pfam07303
    Location:505 → 606
    Occludin_ELL; Occludin homology domain
    pfam10390
    Location:6 → 292
    ELL; RNA polymerase II elongation factor ELL

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    44427274..44506570
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005632688.4 → XP_005632745.1  RNA polymerase II elongation factor ELL isoform X2

    UniProtKB/TrEMBL
    A0A8C0TN50, A0A8I3S513
    Conserved Domains (3) summary
    PHA03247
    Location:265 → 481
    PHA03247; large tegument protein UL36; Provisional
    pfam07303
    Location:469 → 570
    Occludin_ELL; Occludin homology domain
    pfam10390
    Location:7 → 256
    ELL; RNA polymerase II elongation factor ELL

  2. XM_541936.6 → XP_541936.2  RNA polymerase II elongation factor ELL isoform X1

    UniProtKB/TrEMBL
    A0A8C0KGP7, A0A8C0TN50, A0A8I3S513
    Conserved Domains (3) summary
    PHA03247
    Location:301 → 517
    PHA03247; large tegument protein UL36; Provisional
    pfam07303
    Location:505 → 606
    Occludin_ELL; Occludin homology domain
    pfam10390
    Location:6 → 292
    ELL; RNA polymerase II elongation factor ELL
Nucleotide Protein
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