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SFMBT1 Scm like with four mbt domains 1 [ Canis lupus familiaris (dog) ]

Gene ID: 484728, updated on 17-Aug-2024

Summary

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Official Symbol
SFMBT1provided by VGNC
Official Full Name
Scm like with four mbt domains 1provided by VGNC
Primary source
VGNC:VGNC:46076
See related
Ensembl:ENSCAFG00845029085
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 20
Exon count:
27
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 20 NC_051824.1 (37130153..37256719)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 20 NC_006602.4 (36788231..36914516)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 20 NC_049241.1 (37207224..37327384)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 20 NC_049280.1 (36567757..36687554)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 20 NC_049761.1 (36928798..37055250)

Chromosome 20 - NC_051824.1Genomic Context describing neighboring genes Neighboring gene RFT1 homolog Neighboring gene cytochrome c oxidase assembly protein COX19-like Neighboring gene dephospho-CoA kinase domain-containing protein-like Neighboring gene uncharacterized LOC102151768 Neighboring gene store-operated calcium entry regulator STIMATE Neighboring gene uncharacterized LOC111091316 Neighboring gene musculoskeletal, embryonic nuclear protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
scm-like with four MBT domains protein 1; LOW QUALITY PROTEIN: scm-like with four MBT domains protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051824.1 Reference ROS_Cfam_1.0

    Range
    37130153..37256719
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038427502.1 → XP_038283430.1  scm-like with four MBT domains protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0T5U0
    Conserved Domains (3) summary
    cd09581
    Location:784 → 868
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00561
    Location:23 → 120
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:504 → 619
    SLED; SLED domain

  2. XM_038427509.1 → XP_038283437.1  scm-like with four MBT domains protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0JV75
    Conserved Domains (2) summary
    smart00561
    Location:23 → 120
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:504 → 619
    SLED; SLED domain

  3. XM_038427510.1 → XP_038283438.1  scm-like with four MBT domains protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8C0JV75
    Conserved Domains (2) summary
    smart00561
    Location:23 → 120
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:504 → 619
    SLED; SLED domain

  4. XM_038427501.1 → XP_038283429.1  scm-like with four MBT domains protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0T5U0
    Conserved Domains (3) summary
    cd09581
    Location:784 → 868
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00561
    Location:23 → 120
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:504 → 619
    SLED; SLED domain

  5. XM_038427503.1 → XP_038283431.1  scm-like with four MBT domains protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0T5U0
    Conserved Domains (3) summary
    cd09581
    Location:784 → 868
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00561
    Location:23 → 120
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:504 → 619
    SLED; SLED domain

  6. XM_038427500.1 → XP_038283428.1  scm-like with four MBT domains protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0T5U0
    Conserved Domains (3) summary
    cd09581
    Location:784 → 868
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00561
    Location:23 → 120
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:504 → 619
    SLED; SLED domain

  7. XM_038427508.1 → XP_038283436.1  scm-like with four MBT domains protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0T5U0, A0A8I3Q269, A0A8P0NB42
    Related
    ENSCAFP00845040381.1, ENSCAFT00845051467.1
    Conserved Domains (3) summary
    cd09581
    Location:782 → 866
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00561
    Location:23 → 120
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:502 → 617
    SLED; SLED domain

  8. XM_038427506.1 → XP_038283434.1  scm-like with four MBT domains protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0T5U0
    Conserved Domains (3) summary
    cd09581
    Location:784 → 868
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00561
    Location:23 → 120
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:504 → 619
    SLED; SLED domain

  9. XM_038427507.1 → XP_038283435.1  scm-like with four MBT domains protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0T5U0
    Conserved Domains (3) summary
    cd09581
    Location:784 → 868
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00561
    Location:23 → 120
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:504 → 619
    SLED; SLED domain

  10. XM_038427504.1 → XP_038283432.1  scm-like with four MBT domains protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0T5U0
    Conserved Domains (3) summary
    cd09581
    Location:784 → 868
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00561
    Location:23 → 120
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:504 → 619
    SLED; SLED domain

  11. XM_038427511.1 → XP_038283439.1  scm-like with four MBT domains protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8C0JSN4
    Conserved Domains (3) summary
    cd09581
    Location:646 → 730
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00561
    Location:222 → 315
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:366 → 481
    SLED; SLED domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049280.1 Alternate UMICH_Zoey_3.1

    Range
    36567757..36687554
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038503217.1 → XP_038359145.1  LOW QUALITY PROTEIN: scm-like with four MBT domains protein 1 isoform X2

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049761.1 Alternate UNSW_CanFamBas_1.0

    Range
    36928798..37055250
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038630328.1 → XP_038486256.1  scm-like with four MBT domains protein 1 isoform X1

  2. XM_038630335.1 → XP_038486263.1  scm-like with four MBT domains protein 1 isoform X4

  3. XM_038630334.1 → XP_038486262.1  scm-like with four MBT domains protein 1 isoform X3

  4. XM_038630327.1 → XP_038486255.1  scm-like with four MBT domains protein 1 isoform X1

  5. XM_038630329.1 → XP_038486257.1  scm-like with four MBT domains protein 1 isoform X1

  6. XM_038630326.1 → XP_038486254.1  scm-like with four MBT domains protein 1 isoform X1

  7. XM_038630333.1 → XP_038486261.1  scm-like with four MBT domains protein 1 isoform X2

  8. XM_038630331.1 → XP_038486259.1  scm-like with four MBT domains protein 1 isoform X1

  9. XM_038630332.1 → XP_038486260.1  scm-like with four MBT domains protein 1 isoform X1

  10. XM_038630330.1 → XP_038486258.1  scm-like with four MBT domains protein 1 isoform X1

  11. XM_038630336.1 → XP_038486264.1  scm-like with four MBT domains protein 1 isoform X5

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049241.1 Alternate UU_Cfam_GSD_1.0

    Range
    37207224..37327384
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038566172.1 → XP_038422100.1  LOW QUALITY PROTEIN: scm-like with four MBT domains protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0MB62, A0A8C0T5U0

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    36788231..36914516
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038455988.1 → XP_038311916.1  scm-like with four MBT domains protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0T5U0
    Conserved Domains (3) summary
    cd09581
    Location:784 → 868
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00561
    Location:23 → 120
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:504 → 619
    SLED; SLED domain

  2. XM_022406610.2 → XP_022262318.1  scm-like with four MBT domains protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0JV75
    Conserved Domains (2) summary
    smart00561
    Location:23 → 120
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:504 → 619
    SLED; SLED domain

  3. XM_022406611.2 → XP_022262319.1  scm-like with four MBT domains protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8C0JV75
    Conserved Domains (2) summary
    smart00561
    Location:23 → 120
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:504 → 619
    SLED; SLED domain

  4. XM_022406604.2 → XP_022262312.1  scm-like with four MBT domains protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0T5U0
    Conserved Domains (3) summary
    cd09581
    Location:784 → 868
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00561
    Location:23 → 120
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:504 → 619
    SLED; SLED domain

  5. XM_022406605.2 → XP_022262313.1  scm-like with four MBT domains protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0T5U0
    Conserved Domains (3) summary
    cd09581
    Location:784 → 868
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00561
    Location:23 → 120
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:504 → 619
    SLED; SLED domain

  6. XM_022406603.2 → XP_022262311.1  scm-like with four MBT domains protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0T5U0
    Conserved Domains (3) summary
    cd09581
    Location:784 → 868
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00561
    Location:23 → 120
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:504 → 619
    SLED; SLED domain

  7. XM_844992.6 → XP_850085.1  scm-like with four MBT domains protein 1 isoform X2

    See identical proteins and their annotated locations for XP_850085.1

    UniProtKB/TrEMBL
    A0A8C0T5U0, A0A8I3Q269, A0A8P0NB42
    Conserved Domains (3) summary
    cd09581
    Location:782 → 866
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00561
    Location:23 → 120
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:502 → 617
    SLED; SLED domain

  8. XM_022406608.2 → XP_022262316.1  scm-like with four MBT domains protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0T5U0
    Conserved Domains (3) summary
    cd09581
    Location:784 → 868
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00561
    Location:23 → 120
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:504 → 619
    SLED; SLED domain

  9. XM_022406607.2 → XP_022262315.1  scm-like with four MBT domains protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0T5U0
    Conserved Domains (3) summary
    cd09581
    Location:784 → 868
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00561
    Location:23 → 120
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:504 → 619
    SLED; SLED domain

  10. XM_022406606.2 → XP_022262314.1  scm-like with four MBT domains protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0T5U0
    Conserved Domains (3) summary
    cd09581
    Location:784 → 868
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00561
    Location:23 → 120
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:504 → 619
    SLED; SLED domain

  11. XM_022406612.2 → XP_022262320.1  scm-like with four MBT domains protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8C0JSN4
    Conserved Domains (3) summary
    cd09581
    Location:646 → 730
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00561
    Location:222 → 315
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:366 → 481
    SLED; SLED domain
Nucleotide Protein
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