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RPA135 DNA-directed RNA polymerase I [ Scheffersomyces stipitis CBS 6054 ]

Gene ID: 4839612, updated on 21-Dec-2023

Summary

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Gene symbol
RPA135
Gene description
DNA-directed RNA polymerase I
Locus tag
PICST_77977
Gene type
protein coding
RNA name
DNA-directed RNA polymerase I
RefSeq status
PROVISIONAL
Organism
Scheffersomyces stipitis CBS 6054 (strain: CBS 6054)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Scheffersomyces
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Genomic context

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See RPA135 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_009045.1 (1443170..1446777)

Chromosome 5 - NC_009045.1Genomic Context describing neighboring genes Neighboring gene regulatory subunit for phosphoprotein phosphatase type 1 (PP-1) Neighboring gene hypothetical protein Neighboring gene pantothenate kinase-like protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009045.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Jeffries TW, et al. Nat Biotechnol, 2007 Mar. PMID 17334359

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribonucleoside binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
DNA-directed RNA polymerase I
XP_001384965.2
  • go_function DNA binding; DNA-directed RNA polymerase activity
    go_process transcription

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009045.1 Reference assembly

    Range
    1443170..1446777
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001384928.1 → XP_001384965.2  DNA-directed RNA polymerase I [Scheffersomyces stipitis CBS 6054]

    See identical proteins and their annotated locations for XP_001384965.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A3LWA8
    Conserved Domains (3) summary
    cd00653
    Location:31 → 1163
    RNA_pol_B_RPB2; RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase ...
    pfam04561
    Location:189 → 378
    RNA_pol_Rpb2_2; RNA polymerase Rpb2, domain 2
    pfam06883
    Location:567 → 618
    RNA_pol_Rpa2_4; RNA polymerase I, Rpa2 specific domain
Nucleotide Protein
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