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SER1 3-phosphoserine transaminase [ Scheffersomyces stipitis CBS 6054 ]

Gene ID: 4839561, updated on 21-Dec-2023

Summary

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Gene symbol
SER1
Gene description
3-phosphoserine transaminase
Locus tag
PICST_36392
Gene type
protein coding
RNA name
3-phosphoserine transaminase
RefSeq status
PROVISIONAL
Organism
Scheffersomyces stipitis CBS 6054 (strain: CBS 6054)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Scheffersomyces
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Genomic context

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See SER1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_009045.1 (1219564..1220742)

Chromosome 5 - NC_009045.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene threonine deaminase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009045.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Jeffries TW, et al. Nat Biotechnol, 2007 Mar. PMID 17334359

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-phospho-L-serine:2-oxoglutarate aminotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-serine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
3-phosphoserine transaminase
XP_001384915.1
  • go_function transaminase activity
    go_process metabolism

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009045.1 Reference assembly

    Range
    1219564..1220742
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001384878.1 → XP_001384915.1  3-phosphoserine transaminase [Scheffersomyces stipitis CBS 6054]

    See identical proteins and their annotated locations for XP_001384915.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A3LW21
    Conserved Domains (1) summary
    cl18945
    Location:14 → 391
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
Nucleotide Protein
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